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BaseInfo

ncRNA ID	novel_zma_miR2316
Species	Zea mays
Class	miRNA
Genome position	Chr6:124860876-124860995 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - AUAGGCCUGUUUGGUUUGUGGCUA - 24
Stem-loop(if miRNA)	-    -               -G      U              UC  ----A   AA   CU  AUAG GCCUGUUUGGUUUGU  GCUAAC AUGCCACACUUUGU  AA     UUG  UAA  A  |||| |||||||||||||||  |||||| ||||||||||||||  ||     |||  |||  UAUC CGGACAAACCAAGCG  UGAUUG UACGGUGUGAAACG  UU     GAC  AUU  A G    U               AG      -              GA  GAAAA   GA   CC
Stem-loop sequence	AUAGGCCUGUUUGGUUUGUGGCUAACUAUGCCACACUUUGUUCAAAUUGAAUAACUAACCUUAAGCAGAAAAGUUAGGCAAAGUGUGGCAUGUUAGUGAGCGAACCAAACAGGCUCUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945170.1	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   ||||||||||||||||||||||** targets:944   UAGCCACAAACCAAACAGGCCUUA   967 Target Full Sequence	2.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   ||||||||||||||||||||||** targets:1428   UAGCCACAAACCAAACAGGCCUUA   1451 Target Full Sequence	2.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   |||||||=|||||||||||||*|| targets:819   UAGCCACGAACCAAACAGGCCCAU   842 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ052567.1	ncRNA:24   AU-CGGUGUUUGGUUUGUCCGGAUA   1   ||-||*=|||||||||||||||||| targets:576   UAUGCAGCAAACCAAACAGGCCUAU   600 Target Full Sequence	1.0	TSA: Zea mays contig53688, mRNA sequence	NA	coding protein	psRNATarget
NM_001328519.1	ncRNA:24   AU-CGGUGUUUGGUUUGUCCGGAUA   1   ||-||*=|||||||||=|||||||| targets:523   UAUGCAGCAAACCAAAUAGGCCUAU   547 Target Full Sequence	2.5	Zea mays hypothetical protein (pco113764), mRNA	NA	coding protein	psRNATarget
EU959044.1	ncRNA:24   AU-CGGUGUUUGGUUUGUCCGGAUA   1   ||-||*=|||||||||=|||||||| targets:510   UAUGCAGCAAACCAAAUAGGCCUAU   534 Target Full Sequence	2.5	Zea mays clone 209607 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541995.1	ncRNA:24   AU-CGGUGUUUGGUUUGUCCGGAUA   1   ||-||*=|||||||||=|||||||| targets:524   UAUGCAGCAAACCAAAUAGGCCUAU   548 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (pco113764), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY104775.1	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   |||*|*||||||||||||*||||| targets:650   UAGGCUCAAACCAAACAGCCCUAU   673 Target Full Sequence	2.5	Zea mays PCO061308 mRNA sequence	NA	coding protein	psRNATarget
XM_008649194.2	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   |||*|*||||||||||||*||||| targets:1116   UAGGCUCAAACCAAACAGCCCUAU   1139 Target Full Sequence	2.5	PREDICTED: Zea mays D-aminoacyl-tRNA deacylase (AY104775), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035068.1	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   |||*|*||||||||||||*||||| targets:1256   UAGGCUCAAACCAAACAGCCCUAU   1279 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0035J23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138873.1	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   |||*|*||||||||||||*||||| targets:1257   UAGGCUCAAACCAAACAGCCCUAU   1280 Target Full Sequence	2.5	Zea mays D-aminoacyl-tRNA deacylase (AY104775), mRNA	NA	coding protein	psRNATarget
BT036147.1	ncRNA:24   AUCGGUGUUUGGUUUGUCCGGAUA   1   |||*|*||||||||||||*||||| targets:1257   UAGGCUCAAACCAAACAGCCCUAU   1280 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0098I08 mRNA, complete cds	NA	coding protein	psRNATarget