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BaseInfo

ncRNA ID novel_zma_miR2309
Species Zea mays
Class miRNA
Genome position Chr4:156659399-156659483 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 22
Mature sequence(if miRNA) 1 - UAGGUUUAUACACAUAGUGUCU - 22
Stem-loop(if miRNA) --G      A    G                  CA      CA
   UACUAU UGUA AAACUUAGGAGAACUACA  UGAAAU  U
   |||||| |||| ||||||||||||||||||  ||||||
   GUGAUA ACAU UUUGGAUCCUUUUGAUGU  ACUUUG  A
UCU      C    A                  -A      AG
Stem-loop sequence GUACUAUAUGUAGAAACUUAGGAGAACUACACAUGAAAUCAUAGAGUUUCAAUGUAGUUUUCCUAGGUUUAUACACAUAGUGUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235091.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||||||||||
targets:8   AGACAUUAUGUGUAUAAACCUA   29

1.0 Sequence 1086 from Patent EP2985353 NA coding protein psRNATarget
JB163422.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||||||||||
targets:8   AGACAUUAUGUGUAUAAACCUA   29

1.0 Sequence 1086 from Patent EP2559767 NA coding protein psRNATarget
HI402961.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||||||||||
targets:8   AGACAUUAUGUGUAUAAACCUA   29

1.0 Sequence 1086 from Patent EP2074227 NA coding protein psRNATarget
JB163709.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  ||||||||||||||*|||||||
targets:7   AGACACUAUGUGUAGAAACCUA   28

1.5 Sequence 1373 from Patent EP2559767 NA coding protein psRNATarget
LQ235378.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  ||||||||||||||*|||||||
targets:7   AGACACUAUGUGUAGAAACCUA   28

1.5 Sequence 1373 from Patent EP2985353 NA coding protein psRNATarget
HI403248.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  ||||||||||||||*|||||||
targets:7   AGACACUAUGUGUAGAAACCUA   28

1.5 Sequence 1373 from Patent EP2074227 NA coding protein psRNATarget
HI403194.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1319 from Patent EP2074227 NA coding protein psRNATarget
JB163715.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1379 from Patent EP2559767 NA coding protein psRNATarget
JB163668.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1332 from Patent EP2559767 NA coding protein psRNATarget
JB163667.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1331 from Patent EP2559767 NA coding protein psRNATarget
LQ235336.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1331 from Patent EP2985353 NA coding protein psRNATarget
HI403254.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1379 from Patent EP2074227 NA coding protein psRNATarget
LQ235366.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1361 from Patent EP2985353 NA coding protein psRNATarget
JB163655.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1319 from Patent EP2559767 NA coding protein psRNATarget
HI403236.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1361 from Patent EP2074227 NA coding protein psRNATarget
HI403193.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1318 from Patent EP2074227 NA coding protein psRNATarget
HI403238.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1363 from Patent EP2074227 NA coding protein psRNATarget
LQ235375.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1370 from Patent EP2985353 NA coding protein psRNATarget
LQ235337.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1332 from Patent EP2985353 NA coding protein psRNATarget
HI403245.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1370 from Patent EP2074227 NA coding protein psRNATarget
HI403207.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1332 from Patent EP2074227 NA coding protein psRNATarget
HI403249.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1374 from Patent EP2074227 NA coding protein psRNATarget
JB163697.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1361 from Patent EP2559767 NA coding protein psRNATarget
LQ235384.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1379 from Patent EP2985353 NA coding protein psRNATarget
LQ235324.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1319 from Patent EP2985353 NA coding protein psRNATarget
LQ235368.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1363 from Patent EP2985353 NA coding protein psRNATarget
JB163654.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1318 from Patent EP2559767 NA coding protein psRNATarget
JB163671.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1335 from Patent EP2559767 NA coding protein psRNATarget
LQ235379.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1374 from Patent EP2985353 NA coding protein psRNATarget
JB163699.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1363 from Patent EP2559767 NA coding protein psRNATarget
JB163710.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1374 from Patent EP2559767 NA coding protein psRNATarget
LQ235340.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1335 from Patent EP2985353 NA coding protein psRNATarget
JB163706.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1370 from Patent EP2559767 NA coding protein psRNATarget
HI403206.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1331 from Patent EP2074227 NA coding protein psRNATarget
LQ235323.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1318 from Patent EP2985353 NA coding protein psRNATarget
HI403210.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||=||||||||*|||||||
targets:7   AGACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1335 from Patent EP2074227 NA coding protein psRNATarget
EZ062305.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*||||||||||||*|||||||
targets:61   ACACACUAUGUGUAGAAACCUA   82

1.5 TSA: Zea mays contig63427, mRNA sequence NA coding protein psRNATarget
JB163714.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||*||||||||*|||||||
targets:7   AGACAGUAUGUGUAGAAACCUA   28

2.5 Sequence 1378 from Patent EP2559767 NA coding protein psRNATarget
HI403253.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||*||||||||*|||||||
targets:7   AGACAGUAUGUGUAGAAACCUA   28

2.5 Sequence 1378 from Patent EP2074227 NA coding protein psRNATarget
LQ235383.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |||||*||||||||*|||||||
targets:7   AGACAGUAUGUGUAGAAACCUA   28

2.5 Sequence 1378 from Patent EP2985353 NA coding protein psRNATarget
XM_020551149.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:344   ACGCACUAUGUGUAAAAACCUA   365

1.5 PREDICTED: Zea mays uncharacterized LOC109945307 (LOC109945307), mRNA NA coding protein psRNATarget
JB163683.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:78   ACGCACUAUGUGUAGAAACCUA   99

1.5 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
LQ235352.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:78   ACGCACUAUGUGUAGAAACCUA   99

1.5 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
HI403222.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:78   ACGCACUAUGUGUAGAAACCUA   99

1.5 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget
HI403237.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1362 from Patent EP2074227 NA coding protein psRNATarget
LQ235367.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1362 from Patent EP2985353 NA coding protein psRNATarget
LQ235333.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1328 from Patent EP2985353 NA coding protein psRNATarget
JB163698.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1362 from Patent EP2559767 NA coding protein psRNATarget
JB163713.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1377 from Patent EP2559767 NA coding protein psRNATarget
JB163687.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1351 from Patent EP2559767 NA coding protein psRNATarget
LQ235362.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1357 from Patent EP2985353 NA coding protein psRNATarget
LQ235330.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1325 from Patent EP2985353 NA coding protein psRNATarget
HI403226.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1351 from Patent EP2074227 NA coding protein psRNATarget
JB163661.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1325 from Patent EP2559767 NA coding protein psRNATarget
HI403196.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1321 from Patent EP2074227 NA coding protein psRNATarget
JB163693.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1357 from Patent EP2559767 NA coding protein psRNATarget
JB163664.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1328 from Patent EP2559767 NA coding protein psRNATarget
LQ235382.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1377 from Patent EP2985353 NA coding protein psRNATarget
JB163704.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1368 from Patent EP2559767 NA coding protein psRNATarget
JB163711.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1375 from Patent EP2559767 NA coding protein psRNATarget
LQ235356.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1351 from Patent EP2985353 NA coding protein psRNATarget
HI403232.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1357 from Patent EP2074227 NA coding protein psRNATarget
HI403203.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1328 from Patent EP2074227 NA coding protein psRNATarget
HI403243.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1368 from Patent EP2074227 NA coding protein psRNATarget
JB163657.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1321 from Patent EP2559767 NA coding protein psRNATarget
HI403250.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1375 from Patent EP2074227 NA coding protein psRNATarget
LQ235326.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1321 from Patent EP2985353 NA coding protein psRNATarget
HI403200.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1325 from Patent EP2074227 NA coding protein psRNATarget
LQ235373.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1368 from Patent EP2985353 NA coding protein psRNATarget
LQ235380.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1375 from Patent EP2985353 NA coding protein psRNATarget
HI403252.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1377 from Patent EP2074227 NA coding protein psRNATarget
LQ235332.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1327 from Patent EP2985353 NA coding protein psRNATarget
HI403202.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1327 from Patent EP2074227 NA coding protein psRNATarget
JB163663.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|||||||||||*|||||||
targets:10   ACGCACUAUGUGUACAAACCUA   31

1.5 Sequence 1327 from Patent EP2559767 NA coding protein psRNATarget
HI403220.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|=|||||||||*|||||||
targets:78   ACGCGCUAUGUGUACAAACCUA   99

2.5 Sequence 1345 from Patent EP2074227 NA coding protein psRNATarget
JB163681.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|=|||||||||*|||||||
targets:78   ACGCGCUAUGUGUACAAACCUA   99

2.5 Sequence 1345 from Patent EP2559767 NA coding protein psRNATarget
LQ235350.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|=|||||||||*|||||||
targets:78   ACGCGCUAUGUGUACAAACCUA   99

2.5 Sequence 1345 from Patent EP2985353 NA coding protein psRNATarget
JB163429.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|=|||||||||*|||||||
targets:10   ACGCGCUAUGUGUACAAACCUA   31

2.5 Sequence 1093 from Patent EP2559767 NA coding protein psRNATarget
HI402968.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|=|||||||||*|||||||
targets:10   ACGCGCUAUGUGUACAAACCUA   31

2.5 Sequence 1093 from Patent EP2074227 NA coding protein psRNATarget
LQ235098.1
ncRNA:22   UCUGUGAUACACAUAUUUGGAU   1
  |*=|=|||||||||*|||||||
targets:10   ACGCGCUAUGUGUACAAACCUA   31

2.5 Sequence 1093 from Patent EP2985353 NA coding protein psRNATarget
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