ncRNA ID | novel_zma_miR2308 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:4148906-4149063 [-] |
Reference genome | RefGen_v4 |
Source | SRR2089712 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AUAUUAUACUUUAGUUAUGAC - 21 |
Stem-loop(if miRNA) |
--                         A               -  U        G         AA     AACACAAU   CAUAACUAAAGUAUAAUGUAGUAUU UAAAAACUGUAGUUU CA AAACUUUG UCCCAAACA  GGUCU        A   ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||  |||||   GUAUUGAUUUCAUAUUAUAUCAUAA GUUUUUGACAUCAAA GU UUUGAAAC AGGGUUUGU  CCGGA        U CA                         A               A  U        A         -C     AUUUUCGA |
Stem-loop sequence | CAUAACUAAAGUAUAAUGUAGUAUUAUAAAAACUGUAGUUUCAUAAACUUUGGUCCCAAACAAAGGUCUAACACAAUAUAGCUUUUAAGGCCCUGUUUGGGAACAAAGUUUUUGAAAACUACAGUUUUUGAAAUACUAUAUUAUACUUUAGUUAUGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008670967.2 |
|
1.5 | PREDICTED: Zea mays uncharacterized LOC103646241 (LOC103646241), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_008653629.2 |
|
2.5 | PREDICTED: Zea mays ribosomal protein S6 kinase (S6K), transcript variant X1, mRNA | NA | coding protein | psRNATarget |