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BaseInfo

ncRNA ID novel_zma_miR2308
Species Zea mays
Class miRNA
Genome position Chr5:4148906-4149063 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 21
Mature sequence(if miRNA) 1 - AUAUUAUACUUUAGUUAUGAC - 21
Stem-loop(if miRNA) --                         A               -  U        G         AA     AACACAAU
  CAUAACUAAAGUAUAAUGUAGUAUU UAAAAACUGUAGUUU CA AAACUUUG UCCCAAACA  GGUCU        A
  ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||  |||||
  GUAUUGAUUUCAUAUUAUAUCAUAA GUUUUUGACAUCAAA GU UUUGAAAC AGGGUUUGU  CCGGA        U
CA                         A               A  U        A         -C     AUUUUCGA
Stem-loop sequence CAUAACUAAAGUAUAAUGUAGUAUUAUAAAAACUGUAGUUUCAUAAACUUUGGUCCCAAACAAAGGUCUAACACAAUAUAGCUUUUAAGGCCCUGUUUGGGAACAAAGUUUUUGAAAACUACAGUUUUUGAAAUACUAUAUUAUACUUUAGUUAUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008670967.2
ncRNA:21   CAGUAUUGAUUUCAUAUUAUA   1
  |||||||||||||||||=|||
targets:5   GUCAUAACUAAAGUAUAGUAU   25

1.5 PREDICTED: Zea mays uncharacterized LOC103646241 (LOC103646241), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008653629.2
ncRNA:21   CAGUAUUGAUUUCAUAUUAUA   1
  ||=||||||||||||||=|||
targets:2197   GUUAUAACUAAAGUAUAGUAU   2217

2.5 PREDICTED: Zea mays ribosomal protein S6 kinase (S6K), transcript variant X1, mRNA NA coding protein psRNATarget