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BaseInfo

ncRNA ID novel_zma_miR2306
Species Zea mays
Class miRNA
Genome position Chr5:16625666-16625726 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2287162;SRR2287163;SRR5451004;SRR2089708
Length 24
Mature sequence(if miRNA) 38 - GUAUUGAGGUGGAUUGAGGUGUAA - 61
Stem-loop(if miRNA) --                A       A   
  GUAUUGAGGUGGAUUG GGUGUAA UUAG
  |||||||||||||||| ||||||| |||U
  CAUAACUCCACCUAAC CCACAUU AAUU
CA                C       G   
Stem-loop sequence GUAUUGAGGUGGAUUGAGGUGUAAAUUAGUUUAAGUUACACCCCAAUCCACCUCAAUACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001156128.2
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||||||||||||||||||||
targets:881   UUACACCUCAAUCCACCUCAAUAC   904

0.0 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
BT085755.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||||||||||||||||||||
targets:881   UUACACCUCAAUCCACCUCAAUAC   904

0.0 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
EU941642.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||||||||||||||||||||
targets:8   UUACACCUCAAUCCACCUCAAUAC   31

0.0 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
JB163690.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||||||||||=||||||||
targets:60   UUACACCUCAAUCCAUCUCAAUAC   83

1.5 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
HI403229.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||||||||||=||||||||
targets:60   UUACACCUCAAUCCAUCUCAAUAC   83

1.5 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
LQ235359.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||||||||||=||||||||
targets:60   UUACACCUCAAUCCAUCUCAAUAC   83

1.5 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
LQ235163.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||||||||||||=|||||||
targets:60   UUACACCUCAAUCCACUUCAAUAC   83

1.5 Sequence 1158 from Patent EP2985353 NA coding protein psRNATarget
HI403033.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||||||||||||=|||||||
targets:60   UUACACCUCAAUCCACUUCAAUAC   83

1.5 Sequence 1158 from Patent EP2074227 NA coding protein psRNATarget
JB163494.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||||||||||||=|||||||
targets:60   UUACACCUCAAUCCACUUCAAUAC   83

1.5 Sequence 1158 from Patent EP2559767 NA coding protein psRNATarget
LQ235208.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||=||||||||||||||||||=
targets:60   UUACGCCUCAAUCCACCUCAAUAU   83

1.0 Sequence 1203 from Patent EP2985353 NA coding protein psRNATarget
JB163539.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||=||||||||||||||||||=
targets:60   UUACGCCUCAAUCCACCUCAAUAU   83

1.0 Sequence 1203 from Patent EP2559767 NA coding protein psRNATarget
HI403078.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||=||||||||||||||||||=
targets:60   UUACGCCUCAAUCCACCUCAAUAU   83

1.0 Sequence 1203 from Patent EP2074227 NA coding protein psRNATarget
HI403066.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||||||||||
targets:59   UUACACCCCAAUCCACCUCAAUAC   82

1.0 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||||||||||
targets:59   UUACACCCCAAUCCACCUCAAUAC   82

1.0 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
JB163527.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||||||||||
targets:59   UUACACCCCAAUCCACCUCAAUAC   82

1.0 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
XM_008659899.2
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||||*||||||=||||||||
targets:2119   UUACACCUAAAUCCAUCUCAAUAC   2142

2.5 PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA NA coding protein psRNATarget
AY110566.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||||=|||||
targets:293   UUACACCCCAAUCCACCUUAAUAC   316

2.5 Zea mays CL45690_1 mRNA sequence NA coding protein psRNATarget
LQ235491.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||||=|||||
targets:60   UUACACCCCAAUCCACCUUAAUAC   83

2.5 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||=|||||||
targets:60   UUACACCCCAAUCCACUUCAAUAC   83

2.5 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||=|||||||
targets:60   UUACACCCCAAUCCACUUCAAUAC   83

2.5 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
JB163782.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||=|||||||
targets:60   UUACACCCCAAUCCACUUCAAUAC   83

2.5 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
JB163781.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||=|||||||
targets:60   UUACACCCCAAUCCACUUCAAUAC   83

2.5 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
JB163822.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||||=|||||
targets:60   UUACACCCCAAUCCACCUUAAUAC   83

2.5 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||=|||||||||||
targets:60   UUACACCCCAAUUCACCUCAAUAC   83

2.5 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=|||||||||||||||
targets:51   UUACACCCUAAUCCACCUCAAUAC   74

2.0 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
HI403319.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||=|||||||||||
targets:60   UUACACCCCAAUUCACCUCAAUAC   83

2.5 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
JB163780.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||=|||||||||||
targets:60   UUACACCCCAAUUCACCUCAAUAC   83

2.5 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
HI403321.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||=|||||||
targets:60   UUACACCCCAAUCCACUUCAAUAC   83

2.5 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
HI403361.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||||=|||||
targets:60   UUACACCCCAAUCCACCUUAAUAC   83

2.5 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
HI403320.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||=|||||||
targets:60   UUACACCCCAAUCCACUUCAAUAC   83

2.5 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
JB163411.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=|||||||||||||||
targets:58   UUACACCCUAAUCCACCUCAAUAC   81

2.0 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=|||||||||||||||
targets:58   UUACACCCUAAUCCACCUCAAUAC   81

2.0 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
HI402950.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=|||||||||||||||
targets:58   UUACACCCUAAUCCACCUCAAUAC   81

2.0 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
HI402996.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*|||||||=||||||||
targets:56   UUACACCCCAAUCCAUCUCAAUAC   79

2.5 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=|||||||||||||||
targets:58   UUACACCAUAAUCCACCUCAAUAC   81

2.0 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
JB163457.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*|||||||=||||||||
targets:56   UUACACCCCAAUCCAUCUCAAUAC   79

2.5 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*|||||||=||||||||
targets:56   UUACACCCCAAUCCAUCUCAAUAC   79

2.5 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
JB163427.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=|||||||||||||||
targets:58   UUACACCAUAAUCCACCUCAAUAC   81

2.0 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
HI402966.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=|||||||||||||||
targets:58   UUACACCAUAAUCCACCUCAAUAC   81

2.0 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
EU963469.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||-||||=|||||||||||||||
targets:972   UUA-ACCUUAAUCCACCUCAAUAC   994

1.0 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
LQ235622.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||=*=|||||||||||||||
targets:74   UUACACUCUAAUCCACCUCAAUAC   97

3.0 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
HI403492.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||=*=|||||||||||||||
targets:74   UUACACUCUAAUCCACCUCAAUAC   97

3.0 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
JB163953.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  ||||||=*=|||||||||||||||
targets:74   UUACACUCUAAUCCACCUCAAUAC   97

3.0 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
JB163478.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||=|||*||||||=|||||||||
targets:59   UUAUACCCCAAUCCGCCUCAAUAC   82

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
HI403017.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||=|||*||||||=|||||||||
targets:59   UUAUACCCCAAUCCGCCUCAAUAC   82

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||=|||*||||||=|||||||||
targets:59   UUAUACCCCAAUCCGCCUCAAUAC   82

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
HI407232.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||-||||=|||||||||||||||
targets:22   UUA-ACCUUAAUCCACCUCAAUAC   44

1.0 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
LQ239362.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||-||||=|||||||||||||||
targets:22   UUA-ACCUUAAUCCACCUCAAUAC   44

1.0 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
JB167693.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||-||||=|||||||||||||||
targets:22   UUA-ACCUUAAUCCACCUCAAUAC   44

1.0 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
EU949321.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*=||||||||||||||*
targets:520   UUACACCCUAAUCCACCUCAAUAG   543

3.0 Zea mays clone 401072 mRNA sequence NA coding protein psRNATarget
HI403376.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||*|||||||
targets:60   UUACACCCCAAUCCACAUCAAUAC   83

2.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
JB163837.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||*|||||||
targets:60   UUACACCCCAAUCCACAUCAAUAC   83

2.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||*|||||||
targets:60   UUACACCCCAAUCCACAUCAAUAC   83

2.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
JB163536.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||*|||||||
targets:59   UUACACCCCAAUCCACAUCAAUAC   82

2.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
HI403075.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||*|||||||
targets:59   UUACACCCCAAUCCACAUCAAUAC   82

2.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||||||*||||||||*|||||||
targets:59   UUACACCCCAAUCCACAUCAAUAC   82

2.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
HI403198.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  *||||*|||||||||||||||*||
targets:60   GUACAACUCAAUCCACCUCAACAC   83

2.5 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
JB163659.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  *||||*|||||||||||||||*||
targets:60   GUACAACUCAAUCCACCUCAACAC   83

2.5 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
LQ235328.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  *||||*|||||||||||||||*||
targets:60   GUACAACUCAAUCCACCUCAACAC   83

2.5 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
XM_020537806.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||*|||*=||||||||||||||=
targets:5352   UUAAACCAUAAUCCACCUCAAUAU   5375

3.0 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537807.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||*|||*=||||||||||||||=
targets:5010   UUAAACCAUAAUCCACCUCAAUAU   5033

3.0 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020537805.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||*|||*=||||||||||||||=
targets:4986   UUAAACCAUAAUCCACCUCAAUAU   5009

3.0 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537809.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||*|||*=||||||||||||||=
targets:4986   UUAAACCAUAAUCCACCUCAAUAU   5009

3.0 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020537808.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  |||*|||*=||||||||||||||=
targets:2475   UUAAACCAUAAUCCACCUCAAUAU   2498

3.0 PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X4, mRNA NA coding protein psRNATarget
BT068947.2
ncRNA:24   AAUG-UGGAGUUAGGUGGAGUUAUG   1
  ||==-||||*||||||=||||||||
targets:174   UUGUGACCUGAAUCCAUCUCAAUAC   198

2.5 Zea mays full-length cDNA clone ZM_BFb0013N24 mRNA, complete cds NA coding protein psRNATarget
BT085111.1
ncRNA:24   AAUGUGGAGUUAGGUGGAGUUAUG   1
  *||*|==*||||||||||||||||
targets:1189   GUAAAUUCCAAUCCACCUCAAUAC   1212

3.0 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
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