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BaseInfo

ncRNA ID novel_zma_miR2305
Species Zea mays
Class miRNA
Genome position Chr5:32472147-32472218 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 1 - CAAUCCCCUCCAAUCCCGAAGGGA - 24
Stem-loop(if miRNA) --      A     A         GA A      UA
  CCUUCG GAUUG AGGGGAUUG  G GGAAAU  G
  |||||| ||||| |||||||||  | ||||||
  GGAAGC CUAAC UCCCCUAAC  C CCUUUA  U
AG      C     C         UC A      CU
Stem-loop sequence CCUUCGAGAUUGAAGGGGAUUGGAGAGGAAAUUAGUUCAUUUCCACCUCAAUCCCCUCCAAUCCCGAAGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT037634.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||||||||||||||||||||||
targets:235   CCCCUUCGGGAUUGGAGGGGAUUG   258

0.0 Zea mays full-length cDNA clone ZM_BFb0184G18 mRNA, complete cds NA coding protein psRNATarget
NM_001158145.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||||||||||||||||||||||
targets:1005   CCCCUUCGGGAUUGGAGGGGAUUG   1028

0.0 Zea mays transcription initiation factor TFIID subunit 11 (LOC100285251), mRNA NA coding protein psRNATarget
EU971414.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||||||||||||||||||||||
targets:1005   CCCCUUCGGGAUUGGAGGGGAUUG   1028

0.0 Zea mays clone 364104 transcription initiation factor TFIID subunit 11 mRNA, complete cds NA coding protein psRNATarget
EU941872.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||||||||||||*|||||||||
targets:52   CCCCUUCGGGAUUGAAGGGGAUUG   75

1.5 Zea mays clone 1471472 mRNA sequence NA coding protein psRNATarget
XM_020553162.1
ncRNA:24   AGGGAAG-CCCUAACCUCCCCUAAC   1
  ||||*||-|||||||||||||||||
targets:861   UCCCCUCUGGGAUUGGAGGGGAUUG   885

2.0 PREDICTED: Zea mays uncharacterized LOC100273419 (si946066f08(152)), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008679616.2
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||||||||||||||||*||||*
targets:1147   CCCCUUCGGGAUUGGAGGAGAUUU   1170

2.5 PREDICTED: Zea mays uncharacterized LOC103652675 (LOC103652675), mRNA NA coding protein psRNATarget
EZ069159.1
ncRNA:24   AGG-GAAGCCCUAACCUCCCCUAAC   1
  |||-||||||*|||||||*||||||
targets:14   UCCGCUUCGGUAUUGGAGAGGAUUG   38

2.5 TSA: Zea mays contig04794, mRNA sequence NA coding protein psRNATarget
XM_020546797.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||||*|||||||*|||||||||
targets:5163   CCCCUUGGGGAUUGAAGGGGAUUG   5186

2.5 PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666766.2
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||||*|||||||*|||||||||
targets:5297   CCCCUUGGGGAUUGAAGGGGAUUG   5320

2.5 PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670868.2
ncRNA:24   AGGG-AAGCC--CUAACCUCCCCUAAC   1
  *|==-|||||--|||||||||||||||
targets:2546   GCUUGUUCGGAUGAUUGGAGGGGAUUG   2572

2.5 PREDICTED: Zea mays elongation factor G-2, chloroplastic (LOC103646146), mRNA NA coding protein psRNATarget
EZ111591.1
ncRNA:24   AGGG-AAGCCCUAACCUCCCCUAAC   1
  ||=|-|||||*|||||||*||||||
targets:30   UCUCGUUCGGAAUUGGAGAGGAUUG   54

2.5 TSA: Zea mays contig47252, mRNA sequence NA coding protein psRNATarget
BT086707.2
ncRNA:24   AGGG-AAGCCCUAACCUCCCCUAAC   1
  ||=|-|||||*|||||||*||||||
targets:250   UCUCGUUCGGAAUUGGAGAGGAUUG   274

2.5 Zea mays full-length cDNA clone ZM_BFb0136H07 mRNA, complete cds NA coding protein psRNATarget
XM_008647994.2
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *|||*|*||||||||||||*||||
targets:4607   GCCCAUGGGGAUUGGAGGGAAUUG   4630

2.5 PREDICTED: Zea mays ATP-dependent RNA helicase DEAH13 (LOC103627696), transcript variant X1, mRNA NA coding protein psRNATarget
EU945995.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  ||*|***|||||||||||||||||
targets:359   UCACGAAGGGAUUGGAGGGGAUUG   382

2.0 Zea mays clone 293035 mRNA sequence NA coding protein psRNATarget
XM_020549567.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *******|||||||||||||||||
targets:995   GAGACAGGGGAUUGGAGGGGAUUG   1018

2.0 PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA NA coding protein psRNATarget
HI403275.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *=|****|||=|||||||||||||
targets:26   AUCACGGGGGGUUGGAGGGGAUUG   49

3.0 Sequence 1400 from Patent EP2074227 NA coding protein psRNATarget
LQ235405.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *=|****|||=|||||||||||||
targets:26   AUCACGGGGGGUUGGAGGGGAUUG   49

3.0 Sequence 1400 from Patent EP2985353 NA coding protein psRNATarget
JB163736.1
ncRNA:24   AGGGAAGCCCUAACCUCCCCUAAC   1
  *=|****|||=|||||||||||||
targets:26   AUCACGGGGGGUUGGAGGGGAUUG   49

3.0 Sequence 1400 from Patent EP2559767 NA coding protein psRNATarget
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