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BaseInfo

ncRNA ID novel_zma_miR2304
Species Zea mays
Class miRNA
Genome position Chr5:34026653-34026745 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 70 - ACCGGACUGUUCGGUGGCCCAGAA - 93
Stem-loop(if miRNA) --       --         -   CAGA     GAAG U  AA      AA
  ACCGGAC  UGUUCGGUG GCC    AGCCA    C CC  CGAUCG  C
  |||||||  ||||||||| |||    |||||    | ||  ||||||  C
  UGGCCUG  ACAGGCCAC CGG    UCGGU    G GG  GCUGGC  U
GG       UG         G   ----     -GCA U  --      AA
Stem-loop sequence ACCGGACUGUUCGGUGGCCCAGAAGCCAGAAGCUCCAACGAUCGAACCUAACGGUCGGGUGACGUGGCUGGCGCACCGGACAGUGUCCGGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT038885.1
ncRNA:24   AAG---ACCCGGUGGCUUGUCAGGCCA   1
  *||---||*|||||||=||||||||||
targets:1024   GUCCGAUGCGCCACCGGACAGUCCGGU   1050

2.5 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   AAG---ACCCGGUGGCUUGUCAGGCCA   1
  *||---||*|||||||=||||||||||
targets:1395   GUCCGAUGCGCCACCGGACAGUCCGGU   1421

2.5 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget