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BaseInfo

ncRNA ID novel_zma_miR2303
Species Zea mays
Class miRNA
Genome position Chr4:158868407-158868541 [-]
Reference genome RefGen_v4
Source SRR1583944;SRR2647389;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - ACCGUCCGUCCCUGUGCAGAGGGC - 24
Stem-loop(if miRNA) ---UC     A    UC      C     -  C -U U   GC    C       -    ACCA   A   C
     CUGCA CAGG  GCGGAC GUCCG GC C  G GCC  GGAC GUCCGCG UCUG    GAG GCG C
     ||||| ||||  |||||| ||||| || |  | |||  |||| ||||||| ||||    ||| |||
     GACGU GUCC  UGCCUG CAGGC CG G  C CGG  CCUG CAGGCGC GGAC    CUC CGC G
CGGGA     -    -C      C     G  C UC C   --    C       C    CACG   -   U
Stem-loop sequence UCCUGCAACAGGUCGCGGACCGUCCGGCCCUGUGCCGCGGACCGUCCGCGUCUGACCAGAGAGCGCCGUCGCCUCGCACCAGGCCGCGGACCGUCCGGCCCCUGCGCGCGGACCGUCCGUCCCUGUGCAGAGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU970066.1
ncRNA:24   CGGGAGACGUGUCCCUGCCUGCCA   1
  |||||||||||||||=||||||||
targets:821   GCCCUCUGCACAGGGGCGGACGGU   844

1.5 Zea mays clone 339328 mRNA sequence NA coding protein psRNATarget
EU968855.1
ncRNA:24   CGGGAGACGUGUCCCUGCCUGCCA   1
  |=||*|*||||||||*||||||||
targets:708   GUCCGCGGCACAGGGCCGGACGGU   731

2.5 Zea mays clone 324570 mRNA sequence NA coding protein psRNATarget