Search result

BaseInfo

ncRNA ID novel_zma_miR2302
Species Zea mays
Class miRNA
Genome position Chr5:43379887-43380008 [-]
Reference genome RefGen_v4
Source SRR1583941
Length 24
Mature sequence(if miRNA) 1 - AUUUUAAAUCUGGAACGUCCAUCC - 24
Stem-loop(if miRNA) --                                                     CG  AA
  AUGGACGUUUCAGAUUUAAAAUGUGCACGUGAGCACCGUACCCUUUUGAGCAC  GG  C
  |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
  UACCUGCAAGGUCUAAAUUUUAUACGUGCACUCGUGGCAUGGGGAAACUCGUG  CU  A
CC                                                     AU  AU
Stem-loop sequence AUGGACGUUUCAGAUUUAAAAUGUGCACGUGAGCACCGUACCCUUUUGAGCACCGGGAACAUAUCUAGUGCUCAAAGGGGUACGGUGCUCACGUGCAUAUUUUAAAUCUGGAACGUCCAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008661793.2
ncRNA:24   CCUACCUGCAAGGUCUAAAUUUUA   1
  |||||||=|||=||||||||||||
targets:1038   GGAUGGAUGUUUCAGAUUUAAAAU   1061

2.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661794.2
ncRNA:24   CCUACCUGCAAGGUCUAAAUUUUA   1
  |||||||=|||=||||||||||||
targets:1047   GGAUGGAUGUUUCAGAUUUAAAAU   1070

2.5 PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537973.1
ncRNA:22   UACCUGCAAGGUCUAAAUUUUA   1
  |||||=||||||||||||||||
targets:1   AUGGAUGUUCCAGAUUUAAAAU   22

1.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM22-4-like (LOC109939669), mRNA NA coding protein psRNATarget