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BaseInfo

ncRNA ID	novel_zma_miR2300
Species	Zea mays
Class	miRNA
Genome position	Chr5:37904683-37904809 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	20
Mature sequence(if miRNA)	108 - AAACGACUUACAAUUUGGAA - 127
Stem-loop(if miRNA)	--      C          C           G    A  CCUUCUCCUACAC              CCAAAU GUAAGUCGUU UGGCUUUUCUA AUAC UA             AUCUAGAUAUGU   |||||| |||||||||| ||||||||||| |||| ||             |||||||||||G   GGUUUA CAUUCAGCAA GCCGAAAAGAU UAUG AU             UAGAUCUGUAUG AA      A          A           A    C  CAAAAAAUAUACA
Stem-loop sequence	CCAAAUCGUAAGUCGUUCUGGCUUUUCUAGAUACAUACCUUCUCCUACACAUCUAGAUAUGUGGUAUGUCUAGAUACAUAUAAAAAACUACGUAUAUAGAAAAGCCGAAACGACUUACAAUUUGGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT041731.2	ncRNA:20   AAGGUUUAACAUUCAGCAAA   1   |||=|||||||||||||||| targets:854   UUCUAAAUUGUAAGUCGUUU   873 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0040J03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086175.2	ncRNA:20   AAGGUUUAACAUUCAGCAAA   1   ||*||||||||||||||||| targets:1501   UUGCAAAUUGUAAGUCGUUU   1520 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0125C17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008683130.2	ncRNA:20   AAGGUUUAACAUUCAGCAAA   1   ||||||||||*||||||||| targets:1918   UUCCAAAUUGGAAGUCGUUU   1937 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100272378 (LOC100272378), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008683130.2	ncRNA:20   AAGGUUUAACAUUCAGCAAA   1   *|||||||||*||||||||| targets:1991   AUCCAAAUUGGAAGUCGUUU   2010 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100272378 (LOC100272378), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020553141.1	ncRNA:20   AAGGUUUAACAUUCAGCAAA   1   ||||||||||*||||||||| targets:1624   UUCCAAAUUGGAAGUCGUUU   1643 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100272378 (LOC100272378), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549736.1	ncRNA:20   AAGGUUUAACAUUCAGCAAA   1   |*||||||||||||||*||| targets:1846   UCCCAAAUUGUAAGUCAUUU   1865 Target Full Sequence	2.5	PREDICTED: Zea mays CTD-phosphatase-like protein (LOC100283041), transcript variant X4, mRNA	NA	coding protein	psRNATarget