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BaseInfo

ncRNA ID novel_zma_miR2298
Species Zea mays
Class miRNA
Genome position Chr5:54595472-54595597 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 103 - CUGCGUACGCGCGGACCGUCCGAC - 126
Stem-loop(if miRNA) --       C C C    C     ACCC     - G    CC    --    GUCAG     A  C
  CUGCGUA G G GGAC GUCCG    CAGGG C CGGA  GUCU  GGCC     GCAGG GC U
  ||||||| | | |||| |||||    ||||| | ||||  ||||  ||||     ||||| ||
  GACGUGU C C CCUG CAGGC    GUCCC G GCCU  CAGG  CCGG     CGUUC CG U
GA       C C A    U     GCGC     C -    AC    CG    -ACCA     -  A
Stem-loop sequence CUGCGUACGCGCGGACCGUCCGACCCCAGGGCGCGGACCGUCUGGCCGUCAGGCAGGAGCCUUAGCCUUGCACCAGGCCGCGGACCAUCCGGCCCCUGCGCGCGGACUGUCCACCCCUGUGCAGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001175289.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  ||||||||||||||||||=|||||
targets:1753   GUCGGACGGUCCGCGCGUGCGCAG   1776

1.5 Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA NA coding protein psRNATarget
BT064749.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  ||||||||||||||||||=|||||
targets:1753   GUCGGACGGUCCGCGCGUGCGCAG   1776

1.5 Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds NA coding protein psRNATarget
EU970066.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||||||||
targets:1001   GCCGGACGGUCCGCGCGUACGCAG   1024

0.0 Zea mays clone 339328 mRNA sequence NA coding protein psRNATarget
EU943239.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:344   GCCGGACGGUCCGCGCGUGCGCAG   367

1.5 Zea mays clone 1589479 mRNA sequence NA coding protein psRNATarget
BT061906.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:285   GCCGGACGGUCCGCGCGUGCGCAG   308

1.5 Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds NA coding protein psRNATarget
EU974386.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:866   GCCGGACGGUCCGCGCGUGCGCAG   889

1.5 Zea mays clone 447822 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968855.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:793   GCCGGACGGUCCGCGCGUGCGCAG   816

1.5 Zea mays clone 324570 mRNA sequence NA coding protein psRNATarget
XM_020547963.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1127   GCCGGACGGUCCGCGCGUGCGCAG   1150

1.5 PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA NA coding protein psRNATarget
BT062567.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1332   GCCGGACGGUCCGCGCGUGCGCAG   1355

1.5 Zea mays full-length cDNA clone ZM_BFb0315B06 mRNA, complete cds NA coding protein psRNATarget
NM_001174685.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1332   GCCGGACGGUCCGCGCGUGCGCAG   1355

1.5 Zea mays uncharacterized LOC100381908 (LOC100381908), mRNA NA coding protein psRNATarget
NM_001174686.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1457   GCCGGACGGUCCGCGCGUGCGCAG   1480

1.5 Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA NA coding protein psRNATarget
BT062568.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1457   GCCGGACGGUCCGCGCGUGCGCAG   1480

1.5 Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds NA coding protein psRNATarget
NM_001310588.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1442   GCCGGACGGUCCGCGCGUGCGCAG   1465

1.5 Zea mays uncharacterized LOC100272476 (IDP716), mRNA NA coding protein psRNATarget
NM_001196134.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1552   GCCGGACGGUCCGCGCGUGCGCAG   1575

1.5 Zea mays hypothetical protein (LOC100501411), mRNA NA coding protein psRNATarget
BT085255.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1552   GCCGGACGGUCCGCGCGUGCGCAG   1575

1.5 Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds NA coding protein psRNATarget
BT038788.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:1524   GCCGGACGGUCCGCGCGUGCGCAG   1547

1.5 Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds NA coding protein psRNATarget
XM_020539115.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  |*||||||||||||||||=|||||
targets:2227   GCCGGACGGUCCGCGCGUGCGCAG   2250

1.5 PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA NA coding protein psRNATarget
BT088349.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  **||||||||||||||||=|||||
targets:781   CGCGGACGGUCCGCGCGUGCGCAG   804

1.5 Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds NA coding protein psRNATarget
NM_001196968.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  **||||||||||||||||=|||||
targets:781   CGCGGACGGUCCGCGCGUGCGCAG   804

1.5 Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA NA coding protein psRNATarget
XM_020537935.1
ncRNA:23   AGCCUGCCAGGCGCGCAUGCGUC   1
  *=|||*|||||||||||*|||||
targets:1   AUGGAAGGUCCGCGCGUCCGCAG   23

2.5 PREDICTED: Zea mays fe(2+) transport protein 1-like (LOC109939635), mRNA NA coding protein psRNATarget
XM_020549172.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  **=|||*|||||||||||*|||||
targets:138   CAUGGAAGGUCCGCGCGUCCGCAG   161

2.5 PREDICTED: Zea mays WD repeat-containing protein slp1-like (LOC103647931), mRNA NA coding protein psRNATarget
XM_020549172.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  **=*||*|||||||||||*|||||
targets:42   CAUAGAAGGUCCGCGCGUCCGCAG   65

2.5 PREDICTED: Zea mays WD repeat-containing protein slp1-like (LOC103647931), mRNA NA coding protein psRNATarget
EU955700.1
ncRNA:24   CAGCCUGCCAGGCGCGCAUGCGUC   1
  **=|||*|||||||||||*|||||
targets:102   CAUGGAAGGUCCGCGCGUCCGCAG   125

2.5 Zea mays clone 1542763 mRNA sequence NA coding protein psRNATarget
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