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BaseInfo

ncRNA ID novel_zma_miR2292
Species Zea mays
Class miRNA
Genome position Chr5:111861899-111862031 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 110 - AGGCAUCGAGUGAAGGGUAGCGUC - 133
Stem-loop(if miRNA) ----AG  A        A                U  GCCC A  A     CCUCCGA  G     UU    
      GC UCGAGUGA GGGUAGCGUCUUCGCC UC    C AC UUUUC       GG ACCAG  UGACU
      || |||||||| |||||||||||||||| ||    | || |||||       || |||||  ||||A
      UG AGCUCGCU CCCGUCGCAGAGGUGG AG    G UG AGAAG       CC UGGUC  ACUGA
CCUUGG  A        -                U  -AUC C  C     -------  G     -U    
Stem-loop sequence AGGCAUCGAGUGAAGGGUAGCGUCUUCGCCUUCGCCCCAACAUUUUCCCUCCGAGGGACCAGUUUGACUAAGUCAUCUGGUGCCGAAGACGUCGCUAGAUGGUGGAGACGCUGCCCUCGCUCGAAGUGGUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU973405.1
ncRNA:24   CUGCGAUGGGAAGUGAGCUACGGA   1
  |||||||||||||=||||||||||
targets:394   GACGCUACCCUUCGCUCGAUGCCU   417

1.5 Zea mays clone 398173 hypothetical protein mRNA, complete cds NA coding protein psRNATarget