Search result

BaseInfo

ncRNA ID	novel_zma_miR2284
Species	Zea mays
Class	miRNA
Genome position	Chr10:136621014-136621172 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2287165;SRR5451005
Length	24
Mature sequence(if miRNA)	136 - GCCUUAUAUACUAGGACGGAGGGA - 159
Stem-loop(if miRNA)	--     A   C         U         G  -CUG    AAAAACUAAAAAAA     CUAUAUUACUGCAUCAAUGUACGC   CCUCC UCC AGUAUAUAA GCAUAACCA CU    GUUC              UGUAU                        A   ||||| ||| ||||||||| ||||||||| ||    ||||              |||||                        U   GGAGG AGG UCAUAUAUU CGUAUUGGU GA    UAAG              GAGUA                        G AG     C   A         C         -  AAAA    ----------AUCA     UUAUAUUCCACACUAGAGAGAUCU
Stem-loop sequence	CCUCCAUCCCAGUAUAUAAUGCAUAACCAGCUCUGGUUCAAAAACUAAAAAAAUGUAUCUAUAUUACUGCAUCAAUGUACGCAUGUCUAGAGAGAUCACACCUUAUAUUAUGAGACUAGAAUAAAAAGUGGUUAUGCCUUAUAUACUAGGACGGAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941116.1	ncRNA:24   AGGGAGGCAGGAUCAUAUAUUCCG   1   ||||||||||||||*||||||||| targets:560   UCCCUCCGUCCUAGGAUAUAAGGC   583 Target Full Sequence	1.5	Zea mays clone 1291101 mRNA sequence	NA	coding protein	psRNATarget
EU974289.1	ncRNA:24   AGGGAGGCAGGAUCAUAUAUUCCG   1   |||||||||||*|||||||||||| targets:196   UCCCUCCGUCCCAGUAUAUAAGGC   219 Target Full Sequence	1.5	Zea mays clone 445101 mRNA sequence	NA	coding protein	psRNATarget
XM_020546407.1	ncRNA:24   AGGGAGGCAGGAUCAUAUAUUCCG   1   |||||=|||||*|||||||||||| targets:781   UCCCUUCGUCCCAGUAUAUAAGGC   804 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109943429), mRNA	NA	coding protein	psRNATarget