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BaseInfo

ncRNA ID osa-miR167i-5p
Species Oryza sativa
Class miRNA
Genome position Chr6:27674749-27674949 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - UGAAGCUGCCAGCAUGAUCUG - 31
Stem-loop(if miRNA) U       GC         C              C     UUGCACU       AUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGC
 GUGAGAG  UGAAGCUGC AGCAUGAUCUGGUC AUGAG       GCUGAAU                                                 A
 |||||||  ||||||||| |||||||||||||| |||||       |||||||
 CACUCUC  ACUUCGACG UUGUACUAGACUAG UACUU       AAUUUCU                                                 U
U       UC         -              C     ------U       GUACCUACGGAAGUUUGGCUAGUUUAGGUAUGUAUCGAGUCUUGUUGCU
Stem-loop sequence UGUGAGAGGCUGAAGCUGCCAGCAUGAUCUGGUCCAUGAGUUGCACUGCUGAAUAUAUUGAAUUCAGCCAGGAGCUGCUACUGCAGUUCUGAUCUCGAUCUGCAUUCGUUGUUCUGAGCUAUGUAUGGAUUUGAUCGGUUUGAAGGCAUCCAUGUCUUUAAUUUCAUCGAUCAGAUCAUGUUGCAGCUUCACUCUCUCACU

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).