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BaseInfo

ncRNA ID novel_zma_miR2278
Species Zea mays
Class miRNA
Genome position Chr5:214802978-214803164 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2089707
Length 24
Mature sequence(if miRNA) 164 - UAAGAGGGUGUUUGGUUUCUAGGG - 187
Stem-loop(if miRNA) --UA  A                                    U           U    A  AUAU                          
    AG GGGUGUUUGGUUUCUAGGGACUAAUGUUUAGUCCCU CAUUUUAUUCU UUUU GU    AAAUUGCUAAAUAUAGAAACUAAAAUA
    || |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||    ||||||||||||||||||||||||||A
    UC CCCACAAACCAAAGAUCCCUGAUUACAAAUCAGGGA GUAAAAUAAGG AAAA CA    UUUAACGAUUUAUAUCUUUGAUUUUGA
CGAA  C                                    U           U    A  AGGU                          
Stem-loop sequence UAAGAGGGUGUUUGGUUUCUAGGGACUAAUGUUUAGUCCCUUCAUUUUAUUCUUUUUUAGUAUAUAAAUUGCUAAAUAUAGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUAGCAAUUUUGGAACAAAAAUGGAAUAAAAUGUAGGGACUAAACAUUAGUCCCUAGAAACCAAACACCCCCUAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008674147.2
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |||||||||||||||||||*||||
targets:31   CCCUAGAAACCAAACACCCCCUUA   54

1.5 PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |=|||||||||||||||||*||||
targets:941   CUCUAGAAACCAAACACCCCCUUA   964

1.5 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
BT055601.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |=|||||||||||||||||*||||
targets:941   CUCUAGAAACCAAACACCCCCUUA   964

1.5 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
BT083492.2
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  ||||||||||=||||||||*||||
targets:803   CCCUAGAAACUAAACACCCCCUUA   826

2.5 Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |*|||||||||||||||||*||||
targets:965   CACUAGAAACCAAACACCCCCUUA   988

1.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676281.2
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |||||*|||||||||||||*||||
targets:46   CCCUACAAACCAAACACCCCCUUA   69

2.5 PREDICTED: Zea mays U-box domain-containing protein 14 (LOC103650716), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |=||*||||||||||||||*||||
targets:969   CUCUUGAAACCAAACACCCCCUUA   992

1.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |=||*||||||||||||||*||||
targets:969   CUCUUGAAACCAAACACCCCCUUA   992

1.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
EU957896.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |*=||||||||||||||||*||||
targets:1397   CGUUAGAAACCAAACACCCCCUUA   1420

1.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  |*|||||||||||||||||*|||=
targets:1695   CACUAGAAACCAAACACCCCCUUG   1718

2.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
BT066887.1
ncRNA:24   GG-GAUCUUUGGUUUGUGGGAGAAU   1
  ||-=|||=|||||||||*|||||||
targets:1189   CCGUUAGGAACCAAACAGCCUCUUA   1213

2.5 Zea mays full-length cDNA clone ZM_BFb0086N12 mRNA, complete cds NA coding protein psRNATarget
BT017881.1
ncRNA:24   GG-GAUCUUUGGUUUGUGGGAGAAU   1
  ||-=|||=|||||||||*|||||||
targets:1114   CCGUUAGGAACCAAACAGCCUCUUA   1138

2.5 Zea mays clone EL01N0514B08.c mRNA sequence NA coding protein psRNATarget
NM_001158017.1
ncRNA:24   GG-GAUCUUUGGUUUGUGGGAGAAU   1
  ||-=|||=|||||||||*|||||||
targets:1257   CCGUUAGGAACCAAACAGCCUCUUA   1281

2.5 Zea mays F-actin capping protein alpha subunit (LOC100285122), mRNA NA coding protein psRNATarget
EU970937.1
ncRNA:24   GG-GAUCUUUGGUUUGUGGGAGAAU   1
  ||-=|||=|||||||||*|||||||
targets:1257   CCGUUAGGAACCAAACAGCCUCUUA   1281

2.5 Zea mays clone 354292 F-actin capping protein alpha subunit mRNA, complete cds NA coding protein psRNATarget
BT088215.1
ncRNA:24   GG-GAUCUUUGGUUUGUGGGAGAAU   1
  ||-=|||=|||||||||*|||||||
targets:1283   CCGUUAGGAACCAAACAGCCUCUUA   1307

2.5 Zea mays full-length cDNA clone ZM_BFc0070N22 mRNA, complete cds NA coding protein psRNATarget
XM_020552698.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  **||||*||||||||||||||||*
targets:821   GGCUAGCAACCAAACACCCUCUUU   844

2.0 PREDICTED: Zea mays signal peptide peptidase-like 4 (LOC103654100), transcript variant X2, mRNA NA coding protein psRNATarget
JB167174.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  ||*||*|||||||||||||*||||
targets:296   CCAUAUAAACCAAACACCCCCUUA   319

2.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI406713.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  ||*||*|||||||||||||*||||
targets:296   CCAUAUAAACCAAACACCCCCUUA   319

2.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  ||*||*|||||||||||||*||||
targets:296   CCAUAUAAACCAAACACCCCCUUA   319

2.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
BT019141.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  ||*||*|||||||||||||*||||
targets:421   CCAUAUAAACCAAACACCCCCUUA   444

2.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
EU955243.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  =*=*||=||=|||||||||||||=
targets:303   UGUCAGGAAUCAAACACCCUCUUG   326

3.0 Zea mays clone 1520078 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU976322.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  =*=*||=||=|||||||||||||=
targets:446   UGUCAGGAAUCAAACACCCUCUUG   469

3.0 Zea mays clone 706364 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT035175.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  =*=*||=||=|||||||||||||=
targets:987   UGUCAGGAAUCAAACACCCUCUUG   1010

3.0 Zea mays full-length cDNA clone ZM_BFb0043I07 mRNA, complete cds NA coding protein psRNATarget
NM_001138192.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  =*=*||=||=|||||||||||||=
targets:987   UGUCAGGAAUCAAACACCCUCUUG   1010

3.0 Zea mays uncharacterized LOC100193024 (LOC100193024), mRNA NA coding protein psRNATarget
XM_020553050.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  =*=*||=||=|||||||||||||=
targets:1068   UGUCAGGAAUCAAACACCCUCUUG   1091

3.0 PREDICTED: Zea mays uncharacterized LOC100193024 (LOC100193024), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553051.1
ncRNA:24   GGGAUCUUUGGUUUGUGGGAGAAU   1
  =*=*||=||=|||||||||||||=
targets:1168   UGUCAGGAAUCAAACACCCUCUUG   1191

3.0 PREDICTED: Zea mays uncharacterized LOC100193024 (LOC100193024), transcript variant X3, mRNA NA coding protein psRNATarget
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