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BaseInfo

ncRNA ID novel_zma_miR2276
Species Zea mays
Class miRNA
Genome position Chr5:20580773-20580909 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 1 - UAGGGCUGAUUUGGUGGUAAGGGA - 24
Stem-loop(if miRNA) --    -                                        A  A    UA    CA     A
  UAGG GCUGAUUUGGUGGUAAGGGAUCCCAAGGGGAUCCAUGGGG AG AAUU  CUUG  AUUCA U
  |||| |||||||||||||||||||||||||||||||||||||||| || ||||  ||||  |||||
  AUUC CGACUAAACCACCAUUCCCUAGGGUUCCCCUAGGUACCCC UC UUAG  GAAC  UAAGU U
AG    A                                        C  C    GG    AA     U
Stem-loop sequence UAGGGCUGAUUUGGUGGUAAGGGAUCCCAAGGGGAUCCAUGGGGAAGAAAUUUACUUGCAAUUCAAUUUUGAAUAACAAGGGGAUUCCUCCCCCAUGGAUCCCCUUGGGAUCCCUUACCACCAAAUCAGCACUUAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066676.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  |||||*||||||||||||||||||
targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363

1.0 Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds NA coding protein psRNATarget
NM_001175907.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  |||||*||||||||||||||||||
targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363

1.0 Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA NA coding protein psRNATarget
XM_020539542.1
ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAU   1
  |||-|||==||||||||||||||||
targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186

2.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008651348.2
ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAU   1
  |||-|||==||||||||||||||||
targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186

2.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539541.1
ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAU   1
  |||-|||==||||||||||||||||
targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186

2.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA NA coding protein psRNATarget
LQ235431.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  |||||*==||||||||||||||||
targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120

3.0 Sequence 1426 from Patent EP2985353 NA coding protein psRNATarget
HI403301.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  |||||*==||||||||||||||||
targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120

3.0 Sequence 1426 from Patent EP2074227 NA coding protein psRNATarget
JB163762.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  |||||*==||||||||||||||||
targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120

3.0 Sequence 1426 from Patent EP2559767 NA coding protein psRNATarget
EU941266.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  |||||*|=||=|||||||||||||
targets:687   UCCCUAAUCAUCAAAUCAGCCCUA   710

3.0 Zea mays clone 1435213 mRNA sequence NA coding protein psRNATarget
EU961132.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  *|||||==|||||||||||||||*
targets:853   CCCCUUGUCACCAAAUCAGCCCUC   876

3.0 Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT040716.2
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  *|||||==|||||||||||||||*
targets:892   CCCCUUGUCACCAAAUCAGCCCUC   915

3.0 Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds NA coding protein psRNATarget
NM_001147738.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  *|||||==|||||||||||||||*
targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920

3.0 Zea mays putative glutathione peroxidase (LOC100273297), mRNA NA coding protein psRNATarget
BT066291.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  *|||||==|||||||||||||||*
targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920

3.0 Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds NA coding protein psRNATarget
NM_001152477.1
ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAU   1
  ||-|||||=||=||||||||||||=
targets:1092   UCUCCUUAUCAUCAAAUCAGCCCUG   1116

3.0 Zea mays Putative SAC3/GANP family protein (LOC100279473), mRNA NA coding protein psRNATarget
BT054307.1
ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAU   1
  ||-|||||=||=||||||||||||=
targets:1092   UCUCCUUAUCAUCAAAUCAGCCCUG   1116

3.0 Zea mays full-length cDNA clone ZM_BFb0234I14 mRNA, complete cds NA coding protein psRNATarget
XM_020538905.1
ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAU   1
  ||-|||||=||=||||||||||||=
targets:3861   UCUCCUUAUCAUCAAAUCAGCCCUG   3885

3.0 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020538904.1
ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAU   1
  ||-|||||=||=||||||||||||=
targets:3864   UCUCCUUAUCAUCAAAUCAGCCCUG   3888

3.0 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008649499.2
ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAU   1
  ||-|||||=||=||||||||||||=
targets:3953   UCUCCUUAUCAUCAAAUCAGCCCUG   3977

3.0 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649500.2
ncRNA:24   AG-GGAAUGGUGGUUUAGUCGGGAU   1
  ||-|||||=||=||||||||||||=
targets:3953   UCUCCUUAUCAUCAAAUCAGCCCUG   3977

3.0 PREDICTED: Zea mays Putative SAC3/GANP family protein (LOC100279473), transcript variant X2, mRNA NA coding protein psRNATarget
BT039623.1
ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAU   1
  |||-||||=||||||||||*|||||
targets:1654   UCCACUUAUCACCAAAUCAACCCUA   1678

2.5 Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds NA coding protein psRNATarget
NM_001147318.1
ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAU   1
  |||-||||=||||||||||*|||||
targets:1654   UCCACUUAUCACCAAAUCAACCCUA   1678

2.5 Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA NA coding protein psRNATarget
XM_020537910.1
ncRNA:24   AGG-GAAUGGUGGUUUAGUCGGGAU   1
  |||-||||=||||||||||*|||||
targets:1762   UCCACUUAUCACCAAAUCAACCCUA   1786

2.5 PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA NA coding protein psRNATarget
EU950017.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  ||||**==||||||||||||||||
targets:513   UCCCGGGUCACCAAAUCAGCCCUA   536

3.0 Zea mays clone 457681 mRNA sequence NA coding protein psRNATarget
XM_020540504.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  ||||**==||||||||||||||||
targets:1878   UCCCGGGUCACCAAAUCAGCCCUA   1901

3.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540503.1
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  ||||**==||||||||||||||||
targets:2316   UCCCGGGUCACCAAAUCAGCCCUA   2339

3.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671854.2
ncRNA:24   AGGGAAUGGUGGUUUAGUCGGGAU   1
  ||||**==||||||||||||||||
targets:71   UCCCCGGUCACCAAAUCAGCCCUA   94

3.0 PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA NA coding protein psRNATarget
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