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BaseInfo

ncRNA ID novel_zma_miR2274
Species Zea mays
Class miRNA
Genome position Chr5:210278334-210278454 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 21
Mature sequence(if miRNA) 1 - UUUUGAGAAAGUUGUGAGGCA - 21
Stem-loop(if miRNA) --                 G   G               C C  GU     AUAAAACUC    A
  UUUUGAGAAAGUUGUGA GCA UAUGUGUAGAAACCU G UG  CUACA         UAUG U
  ||||||||||||||||| ||| ||||||||||||||| | ||  |||||         ||||
  AAAGCUCUUUCAACACU CGU AUACACAUCUUUGGA U AC  GAUGU         GUAC U
AC                 G   G               U C  UG     ---------    U
Stem-loop sequence UUUUGAGAAAGUUGUGAGGCAGUAUGUGUAGAAACCUCGCUGGUCUACAAUAAAACUCUAUGAUUUCAUGUGUAGGUCACUUAGGUUUCUACACAUAGUGCGUCACAACUUUCUCGAAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403222.1
ncRNA:21   ACGGAGUGUUGAAAGAGUUUU   1
  ||=||||||||||||||*|||
targets:160   UGUCUCACAACUUUCUCCAAA   180

2.5 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget
LQ235352.1
ncRNA:21   ACGGAGUGUUGAAAGAGUUUU   1
  ||=||||||||||||||*|||
targets:160   UGUCUCACAACUUUCUCCAAA   180

2.5 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
JB163683.1
ncRNA:21   ACGGAGUGUUGAAAGAGUUUU   1
  ||=||||||||||||||*|||
targets:160   UGUCUCACAACUUUCUCCAAA   180

2.5 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget