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BaseInfo

ncRNA ID novel_zma_miR2271
Species Zea mays
Class miRNA
Genome position Chr5:201737170-201737239 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 21
Mature sequence(if miRNA) 50 - UAAGGGAGAUUGGAGGAGAUU - 70
Stem-loop(if miRNA) --    U          G ------    C G     UU
  UCUC CUCUAGUCUU U      CACC U AGAUC  G
  |||| |||||||||| |      |||| | |||||
  AGAG GAGGUUAGAG G      GUGG A UUUAG  U
UU    -          G AAUUUG    - G     CU
Stem-loop sequence UCUCUCUCUAGUCUUGUCACCCUGAGAUCUUGUUCGAUUUGAGGUGGUUUAAGGGAGAUUGGAGGAGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669496.2
ncRNA:21   UUAGAGGAGGUUAGAGGGAAU   1
  |*|||||||||||||=||||*
targets:66   AUUCUCCUCCAAUCUUCCUUC   86

2.5 PREDICTED: Zea mays hypothetical protein (LOC100277924), transcript variant X3, mRNA NA coding protein psRNATarget