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BaseInfo

ncRNA ID novel_zma_miR2263
Species Zea mays
Class miRNA
Genome position Chr5:140659478-140659673 [+]
Reference genome RefGen_v4
Source SRR2089712;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287163;SRR2287165
Length 24
Mature sequence(if miRNA) 173 - ACUGUUUAUAGAGUGAAGUUUGAA - 196
Stem-loop(if miRNA) --     AC       CG        A    AC         -AG      CGG          G UA C         GC  U  UAGGAG   AUAG
  CAAAC  CACUUUA  AAUAGUGU GUCU  AGUGUAAGA   UGUUUU   UGACCAUAUG G  A CUGCUAGAU  GG CU      UCU    G
  |||||  |||||||  |||||||| ||||  |||||||||   ||||||   |||||||||| |  | |||||||||  || ||      |||
  GUUUG  GUGAGAU  UUGUCACA CAGA  UCACGUUUU   ACAAAA   GCUGGUAUGC U  U GACGAUCUG  UC GA      AGG    C
AA     AA       AU        A    AA         GUA      CGU          G GC A         UA  U  -UUGGA   GAAG
Stem-loop sequence CAAACACCACUUUACGAAUAGUGUAGUCUACAGUGUAAGAAGUGUUUUCGGUGACCAUAUGGGUAACCUGCUAGAUGCGGUCUUAGGAGUCUAUAGGCGAAGGGAAGGUUAGUCUAUGUCUAGCAGAUCGUGCGUAUGGUCGUGCAAAACAAUGUUUUGCACUAAAGACAACACUGUUUAUAGAGUGAAGUUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU947328.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||||||||||||||||||||
targets:111   UUCAAACUUCACUCUAUAAACAGU   134

0.0 Zea mays clone 339227 mRNA sequence NA coding protein psRNATarget
XM_020549419.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||=|||||||||||||||||||
targets:1425   UUCAGACUUCACUCUAUAAACAGU   1448

0.0 PREDICTED: Zea mays molybdopterin biosynthesis protein CNX1 (LOC103645808), mRNA NA coding protein psRNATarget
XM_020547518.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  |||||||||=|||||=||||||||
targets:5666   UUCAAACUUUACUCUGUAAACAGU   5689

2.5 PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547519.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  |||||||||=|||||=||||||||
targets:5562   UUCAAACUUUACUCUGUAAACAGU   5585

2.5 PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X2, mRNA NA coding protein psRNATarget
BT067977.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||=||||||||||||=||||||||
targets:1147   UUUAAACUUCACUCUGUAAACAGU   1170

1.5 Zea mays full-length cDNA clone ZM_BFb0013K06 mRNA, complete cds NA coding protein psRNATarget
BT036433.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||||*|||||||||||||||
targets:554   UUCAAACUCCACUCUAUAAACAGU   577

1.0 Zea mays full-length cDNA clone ZM_BFb0113I15 mRNA, complete cds NA coding protein psRNATarget
FJ445010.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  |||||||*||||||||||||||||
targets:281   UUCAAACCUCACUCUAUAAACAGU   304

1.0 Zea mays autophagy-related 8d variant 4 (Atg8d) mRNA, complete cds, alternatively spliced NA coding protein psRNATarget
NM_001144023.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  |||||||*||||||||||||||||
targets:281   UUCAAACCUCACUCUAUAAACAGU   304

1.0 Zea mays autophagy-related 8d (Atg8d), mRNA NA coding protein psRNATarget
BT067480.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||=|||||||||||||*|||||||
targets:1233   UUUAAACUUCACUCUACAAACAGU   1256

1.5 Zea mays full-length cDNA clone ZM_BFc0063K12 mRNA, complete cds NA coding protein psRNATarget
NM_001149242.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||=|||||||||||||*|||||||
targets:1233   UUUAAACUUCACUCUACAAACAGU   1256

1.5 Zea mays hypothetical protein (LOC100275042), mRNA NA coding protein psRNATarget
NM_001147196.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||||||=|||||*|||||||
targets:981   UUCAAACUUCGCUCUACAAACAGU   1004

2.5 Zea mays THO complex subunit 4B (si946052g10b), mRNA NA coding protein psRNATarget
BT039327.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||||||=|||||*|||||||
targets:981   UUCAAACUUCGCUCUACAAACAGU   1004

2.5 Zea mays full-length cDNA clone ZM_BFc0005M04 mRNA, complete cds NA coding protein psRNATarget
NM_001158478.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||||*=||||||||||||||
targets:1067   UUCAAACUAUACUCUAUAAACAGU   1090

2.0 Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA NA coding protein psRNATarget
EU973003.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||||*=||||||||||||||
targets:1067   UUCAAACUAUACUCUAUAAACAGU   1090

2.0 Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds NA coding protein psRNATarget
EU963865.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||=|||||||||*|||||||
targets:551   UUCAAAUUUCACUCUAAAAACAGU   574

2.5 Zea mays clone 273586 mRNA sequence NA coding protein psRNATarget
EU963544.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  |||||||||=||||||*|||||||
targets:780   UUCAAACUUUACUCUACAAACAGU   803

2.5 Zea mays clone 263928 mRNA sequence NA coding protein psRNATarget
EZ054764.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||||||=||||||*||||||||||
targets:19   UUCAAAUUUCACUAUAUAAACAGU   42

2.5 TSA: Zea mays contig55886, mRNA sequence NA coding protein psRNATarget
EU966417.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  *|||||||||||||||*|||||||
targets:449   CUCAAACUUCACUCUACAAACAGU   472

1.5 Zea mays clone 294325 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ238616.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  *|||||||||||||||*|||||||
targets:127   CUCAAACUUCACUCUACAAACAGU   150

1.5 Sequence 4611 from Patent EP2985353 NA coding protein psRNATarget
HI406486.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  *|||||||||||||||*|||||||
targets:127   CUCAAACUUCACUCUACAAACAGU   150

1.5 Sequence 4611 from Patent EP2074227 NA coding protein psRNATarget
JB166947.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  *|||||||||||||||*|||||||
targets:127   CUCAAACUUCACUCUACAAACAGU   150

1.5 Sequence 4611 from Patent EP2559767 NA coding protein psRNATarget
EU961778.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  |||=||=|*|||||||||||||||
targets:1243   UUCGAAUUCCACUCUAUAAACAGU   1266

2.0 Zea mays clone 238212 carbonic anhydrase precursor, mRNA, complete cds NA coding protein psRNATarget
NM_001155560.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  |||=||=|*|||||||||||||||
targets:1243   UUCGAAUUCCACUCUAUAAACAGU   1266

2.0 Zea mays carbonic anhydrase (LOC100282652), mRNA NA coding protein psRNATarget
EU949191.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  ||=|||*|||||||||||||=|||
targets:761   UUUAAAAUUCACUCUAUAAAUAGU   784

2.5 Zea mays clone 398601 mRNA sequence NA coding protein psRNATarget
NM_001148370.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  *|||||||||||||||*||||||*
targets:1269   CUCAAACUUCACUCUACAAACAGA   1292

2.5 Zea mays O-sialoglycoprotein endopeptidase (LOC100273984), mRNA NA coding protein psRNATarget
BT042149.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  *|||||||||||||||*||||||*
targets:1269   CUCAAACUUCACUCUACAAACAGA   1292

2.5 Zea mays full-length cDNA clone ZM_BFb0146I19 mRNA, complete cds NA coding protein psRNATarget
EU973746.1
ncRNA:24   AAGUUUGAAGUGAGAUAUUUGUCA   1
  *|=||*||*|||||||||||||||
targets:826   CUUAAUCUACACUCUAUAAACAGU   849

2.0 Zea mays clone 407943 mRNA sequence NA coding protein psRNATarget
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