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BaseInfo

ncRNA ID	novel_zma_miR2255
Species	Zea mays
Class	miRNA
Genome position	Chr4:77147011-77147071 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089713;SRR2089714;SRR2287159;SRR2287160;SRR2287164
Length	24
Mature sequence(if miRNA)	1 - GUGUUGAGGUGGAUUAGGGUGUAA - 24
Stem-loop(if miRNA)	--        G      AG       C      GUGUUGAG UGGAUU  GGUGUAA UUAA   |||||||| ||||||  ||||||| |||A   CAUAACUC AUUUAA  CCACAUU AAUU UA        G      CA       U
Stem-loop sequence	GUGUUGAGGUGGAUUAGGGUGUAACUUAAAUUAAUUUACACCACAAUUUAGCUCAAUACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235080.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||||||||||||||||=|| targets:58   UUACACCCUAAUCCACCUCAAUAC   81 Target Full Sequence	1.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||||||||||||||||=|| targets:58   UUACACCCUAAUCCACCUCAAUAC   81 Target Full Sequence	1.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||||||||||||||||=|| targets:58   UUACACCCUAAUCCACCUCAAUAC   81 Target Full Sequence	1.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||||||||||||||||=|| targets:51   UUACACCCUAAUCCACCUCAAUAC   74 Target Full Sequence	1.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
HI403492.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||=||||||||||||||=|| targets:74   UUACACUCUAAUCCACCUCAAUAC   97 Target Full Sequence	2.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||=||||||||||||||=|| targets:74   UUACACUCUAAUCCACCUCAAUAC   97 Target Full Sequence	2.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
JB163953.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||=||||||||||||||=|| targets:74   UUACACUCUAAUCCACCUCAAUAC   97 Target Full Sequence	2.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
EU949321.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||||||||||||||||=|* targets:520   UUACACCCUAAUCCACCUCAAUAG   543 Target Full Sequence	2.5	Zea mays clone 401072 mRNA sequence	NA	coding protein	psRNATarget
LQ235616.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||=|*||||||||||||||| targets:56   UUACACUCAAAUCCACCUCAACAC   79 Target Full Sequence	2.0	Sequence 1611 from Patent EP2985353	NA	coding protein	psRNATarget
JB163947.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||=|*||||||||||||||| targets:56   UUACACUCAAAUCCACCUCAACAC   79 Target Full Sequence	2.0	Sequence 1611 from Patent EP2559767	NA	coding protein	psRNATarget
HI403486.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||=|*||||||||||||||| targets:56   UUACACUCAAAUCCACCUCAACAC   79 Target Full Sequence	2.0	Sequence 1611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||*|||||||||||||=|| targets:58   UUACACCAUAAUCCACCUCAAUAC   81 Target Full Sequence	2.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||*|||||||||||||=|| targets:58   UUACACCAUAAUCCACCUCAAUAC   81 Target Full Sequence	2.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
HI402966.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||||*|||||||||||||=|| targets:58   UUACACCAUAAUCCACCUCAAUAC   81 Target Full Sequence	2.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||||*||||||||||||=|| targets:59   UUACACCCCAAUCCACCUCAAUAC   82 Target Full Sequence	2.5	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
JB163527.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||||*||||||||||||=|| targets:59   UUACACCCCAAUCCACCUCAAUAC   82 Target Full Sequence	2.5	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*=|||||||||||||||| targets:58   UUACACAUUAAUCCACCUCAACAC   81 Target Full Sequence	2.0	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
HI403066.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||||*||||||||||||=|| targets:59   UUACACCCCAAUCCACCUCAAUAC   82 Target Full Sequence	2.5	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*=|||||||||||||||| targets:58   UUACACAUUAAUCCACCUCAACAC   81 Target Full Sequence	2.0	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*=|||||||||||||||| targets:58   UUACACAUUAAUCCACCUCAACAC   81 Target Full Sequence	2.0	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||=||*||||||||||||||| targets:60   UUACAUCCCAAUCCACCUCAACAC   83 Target Full Sequence	2.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||=||*||||||||||||||| targets:60   UUACAUCCCAAUCCACCUCAACAC   83 Target Full Sequence	2.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||=||*||||||||||||||| targets:60   UUACAUCCCAAUCCACCUCAACAC   83 Target Full Sequence	2.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||=||*||||||||||||||| targets:60   UUACAUCCCAAUCCACCUCAACAC   83 Target Full Sequence	2.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||=||*||||||||||||||| targets:60   UUACAUCCCAAUCCACCUCAACAC   83 Target Full Sequence	2.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||||=||*||||||||||||||| targets:60   UUACAUCCCAAUCCACCUCAACAC   83 Target Full Sequence	2.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
AY110392.1	ncRNA:24   AAUGUGGGA-UUAGGUGGAGUUGUG   1   *||||||||-||||||||||||||| targets:149   AUACACCCUCAAUCCACCUCAACAC   173 Target Full Sequence	2.0	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
HI407232.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||-|||=|||||||||||||=|| targets:22   UUA-ACCUUAAUCCACCUCAAUAC   44 Target Full Sequence	2.5	Sequence 5357 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239362.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||-|||=|||||||||||||=|| targets:22   UUA-ACCUUAAUCCACCUCAAUAC   44 Target Full Sequence	2.5	Sequence 5357 from Patent EP2985353	NA	coding protein	psRNATarget
JB167693.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||-|||=|||||||||||||=|| targets:22   UUA-ACCUUAAUCCACCUCAAUAC   44 Target Full Sequence	2.5	Sequence 5357 from Patent EP2559767	NA	coding protein	psRNATarget
EU963469.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   |||-|||=|||||||||||||=|| targets:972   UUA-ACCUUAAUCCACCUCAAUAC   994 Target Full Sequence	2.5	Zea mays clone 263014 mRNA sequence	NA	coding protein	psRNATarget
BT053958.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*||||||||*|||||||| targets:1445   UUACACACUAAUCCAACUCAACAC   1468 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds	NA	coding protein	psRNATarget
BT066939.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*||||||||*|||||||| targets:1519   UUACACACUAAUCCAACUCAACAC   1542 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds	NA	coding protein	psRNATarget
BT055962.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*||||||||*|||||||| targets:1651   UUACACACUAAUCCAACUCAACAC   1674 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153225.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*||||||||*|||||||| targets:1651   UUACACACUAAUCCAACUCAACAC   1674 Target Full Sequence	2.5	Zea mays choline/ethanolamine kinase (LOC100280298), mRNA	NA	coding protein	psRNATarget
EU962737.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*||||||||*|||||||| targets:1672   UUACACACUAAUCCAACUCAACAC   1695 Target Full Sequence	2.5	Zea mays clone 245096 mRNA sequence	NA	coding protein	psRNATarget
XM_020547679.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*||||||||*|||||||| targets:1693   UUACACACUAAUCCAACUCAACAC   1716 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547680.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   ||||||*||||||||*|||||||| targets:1706   UUACACACUAAUCCAACUCAACAC   1729 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   *||||*|=*||||||||||||||| targets:60   GUACAACUCAAUCCACCUCAACAC   83 Target Full Sequence	3.0	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   *||||*|=*||||||||||||||| targets:60   GUACAACUCAAUCCACCUCAACAC   83 Target Full Sequence	3.0	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   AAUGUGGGAUUAGGUGGAGUUGUG   1   *||||*|=*||||||||||||||| targets:60   GUACAACUCAAUCCACCUCAACAC   83 Target Full Sequence	3.0	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget