Search result

BaseInfo

ncRNA ID	novel_zma_miR2253
Species	Zea mays
Class	miRNA
Genome position	Chr4:71430065-71430158 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2287164
Length	24
Mature sequence(if miRNA)	71 - AUGAGGAAUGAGGUGGUGAUGAAU - 94
Stem-loop(if miRNA)	--G      G A           -----AAUUUG   GGAUAACUUCAU    CAUCAU A UUCAUUUCUCA           GUG            U    |||||| | |||||||||||           |||            C    GUAGUG U GAGUAAGGAGU           AAU            C UAA      G G           AUCAAUCAACA   CAUAAUUAUACA
Stem-loop sequence	GCAUCAUGAAUUCAUUUCUCAAAUUUGGUGGGAUAACUUCAUUCCACAUAUUAAUACUAAACAACUAACUAUGAGGAAUGAGGUGGUGAUGAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546133.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   |||||||||||||||||||||||| targets:628   AUUCAUCACCACCUCAUUCCUCAU   651 Target Full Sequence	0.0	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103634508), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT068564.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*||||||||||||||||||=|| targets:131   AUCCAUCACCACCUCAUUCCUUAU   154 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds	NA	coding protein	psRNATarget
EU949478.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*||||||||=|||||||||||| targets:256   AUCCAUCACCAUCUCAUUCCUCAU   279 Target Full Sequence	1.5	Zea mays clone 416401 mRNA sequence	NA	coding protein	psRNATarget
BT060616.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*||||||||||||||||=|||| targets:1149   AUCCAUCACCACCUCAUUCUUCAU   1172 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0024O19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165701.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*||||||||||||||||=|||| targets:1149   AUCCAUCACCACCUCAUUCUUCAU   1172 Target Full Sequence	1.5	Zea mays putative RING zinc finger domain superfamily protein (LOC100304258), mRNA	NA	coding protein	psRNATarget
BT063621.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*|||||=||||||||||||||| targets:934   AUCCAUCAUCACCUCAUUCCUCAU   957 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0086K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174998.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*|||||=||||||||||||||| targets:934   AUCCAUCAUCACCUCAUUCCUCAU   957 Target Full Sequence	1.0	Zea mays soluble epoxide hydrolase (pco095801), transcript variant 3, mRNA	NA	coding protein	psRNATarget
EU940886.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*||||||||=|||||||||||| targets:883   AUCCAUCACCAUCUCAUUCCUCAU   906 Target Full Sequence	1.5	Zea mays clone 1166248 mRNA sequence	NA	coding protein	psRNATarget
BT024051.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*|||||||||=||||||||||| targets:2027   AUCCAUCACCACUUCAUUCCUCAU   2050 Target Full Sequence	1.5	Zea mays clone EL01N0437F11 mRNA sequence	NA	coding protein	psRNATarget
BT068011.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||||||||=||||||||| targets:1209   AUCUAUCACCACCUUAUUCCUCAU   1232 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0019K20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542382.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*|||||=||||||||||||=|| targets:1197   AUCCAUCAUCACCUCAUUCCUUAU   1220 Target Full Sequence	2.5	PREDICTED: Zea mays deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog (LOC103634732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549921.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||||||||=||||||||| targets:2250   AUCUAUCACCACCUUAUUCCUCAU   2273 Target Full Sequence	1.5	PREDICTED: Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001319048.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||||||||=||||||||| targets:2312   AUCUAUCACCACCUUAUUCCUCAU   2335 Target Full Sequence	1.5	Zea mays putative histone-lysine N-methyltransferase family protein (LOC100383674), mRNA	NA	coding protein	psRNATarget
XM_020547325.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||||||||=||||||||| targets:1110   AUCUAUCACCACCUUAUUCCUCAU   1133 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547324.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||||||||=||||||||| targets:1111   AUCUAUCACCACCUUAUUCCUCAU   1134 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU944542.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*|=||||=|||||=|||||||| targets:1141   AUGCGUCACUACCUCGUUCCUCAU   1164 Target Full Sequence	2.5	Zea mays clone 222066 mRNA sequence	NA	coding protein	psRNATarget
XM_008649207.2	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||=|||||||||=||||| targets:1491   AUCUAUCAUCACCUCAUUUCUCAU   1514 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649205.2	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||=|||||||||=||||| targets:1582   AUCUAUCAUCACCUCAUUUCUCAU   1605 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT036460.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||=|||||||||=||||| targets:1740   AUCUAUCAUCACCUCAUUUCUCAU   1763 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0117E09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139098.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||=|||||||||=||||| targets:1740   AUCUAUCAUCACCUCAUUUCUCAU   1763 Target Full Sequence	2.5	Zea mays F-box protein (LOC100194037), mRNA	NA	coding protein	psRNATarget
XM_008649206.2	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*=||||=|||||||||=||||| targets:1865   AUCUAUCAUCACCUCAUUUCUCAU   1888 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein (LOC100194037), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540676.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   ||*|||=*|||||||||||||||| targets:1923   AUCCAUUUCCACCUCAUUCCUCAU   1946 Target Full Sequence	2.0	PREDICTED: Zea mays HAD-superfamily hydrolase subfamily IG 5'-nucleotidase (cl20716_1(184)), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI406853.1	ncRNA:20   UAGUGGUGGAGUAAGGAGUA   1   |||||||=|||||||||||| targets:1   AUCACCAUCUCAUUCCUCAU   20 Target Full Sequence	1.5	Sequence 4978 from Patent EP2074227	NA	coding protein	psRNATarget
JB167314.1	ncRNA:20   UAGUGGUGGAGUAAGGAGUA   1   |||||||=|||||||||||| targets:1   AUCACCAUCUCAUUCCUCAU   20 Target Full Sequence	1.5	Sequence 4978 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238983.1	ncRNA:20   UAGUGGUGGAGUAAGGAGUA   1   |||||||=|||||||||||| targets:1   AUCACCAUCUCAUUCCUCAU   20 Target Full Sequence	1.5	Sequence 4978 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008683168.2	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   **||=||=||||||||*||||||| targets:59   CCUCGUCGCCACCUCAAUCCUCAU   82 Target Full Sequence	2.5	PREDICTED: Zea mays speckle-type POZ protein (Orphan133), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT039220.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   **||=||=||||||||*||||||| targets:36   CCUCGUCGCCACCUCAAUCCUCAU   59 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0001I15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147165.1	ncRNA:24   UAAGUAGUGGUGGAGUAAGGAGUA   1   **||=||=||||||||*||||||| targets:36   CCUCGUCGCCACCUCAAUCCUCAU   59 Target Full Sequence	2.5	Zea mays speckle-type POZ protein (LOC100272712), mRNA	NA	coding protein	psRNATarget