Search result

BaseInfo

ncRNA ID novel_zma_miR2241
Species Zea mays
Class miRNA
Genome position Chr4:125995626-125995670 [-]
Reference genome RefGen_v4
Source SRR2089712
Length 21
Mature sequence(if miRNA) 1 - UGGUAGUUCAUGUGAUGUGUA - 21
Stem-loop(if miRNA) --CCA  G         C    A
     GU GCAUGAACU ACCA A
     || ||||||||| ||||
     UA UGUACUUGA UGGU G
AUGUG  G         -    G
Stem-loop sequence CCAGUGGCAUGAACUCACCAAAGGUGGUAGUUCAUGUGAUGUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY112403.1
ncRNA:21   AUGU-GUAGUGUACUUGAUGGU   1
  ||||-|||||||||||||||||
targets:88   UACAACAUCACAUGAACUACCA   109

2.0 Zea mays CL4404_1 mRNA sequence NA coding protein psRNATarget
BT055353.1
ncRNA:21   AUGUGUAGUGUACUUGAUGGU   1
  |||||*|||||||||||*|||
targets:1205   UACACUUCACAUGAACUCCCA   1225

2.5 Zea mays full-length cDNA clone ZM_BFb0068C21 mRNA, complete cds NA coding protein psRNATarget
EU976214.1
ncRNA:21   AUGUGUAGUGUACUUGAUGGU   1
  |||||*|||||||||||*|||
targets:599   UACACUUCACAUGAACUCCCA   619

2.5 Zea mays clone 688161 hypothetical protein mRNA, complete cds NA coding protein psRNATarget