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BaseInfo

ncRNA ID novel_zma_miR2234
Species Zea mays
Class miRNA
Genome position Chr10:22616102-22616172 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR5451005
Length 23
Mature sequence(if miRNA) 49 - AGGGAGUGUUAGAUGGUCAGUUA - 71
Stem-loop(if miRNA) --  G       AGA    -    -UAUAUUUA    A
  AG GAGUGUU   UGGU CAGU         GUUG U
  || |||||||   |||| ||||         ||||
  UC UUUACAG   AUCA GUCG         UAAU U
AU  G       ---    A    UAACAAUAG    U
Stem-loop sequence AGGGAGUGUUAGAUGGUCAGUUAUAUUUAGUUGAUUUUAAUGAUAACAAUGCUGAACUAGACAUUUGCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409142.1
ncRNA:23   AUUGACUGGUAGAUUGUGAGGGA   1
  ||=||||||*||||||||*||||
targets:50   UAGCUGACCCUCUAACACACCCU   72

2.5 Sequence 7267 from Patent EP2074227 NA coding protein psRNATarget
LQ242340.1
ncRNA:23   AUUGACUGGUAGAUUGUGAGGGA   1
  ||=||||||*||||||||*||||
targets:50   UAGCUGACCCUCUAACACACCCU   72

2.5 Sequence 8335 from Patent EP2985353 NA coding protein psRNATarget
HI410210.1
ncRNA:23   AUUGACUGGUAGAUUGUGAGGGA   1
  ||=||||||*||||||||*||||
targets:50   UAGCUGACCCUCUAACACACCCU   72

2.5 Sequence 8335 from Patent EP2074227 NA coding protein psRNATarget
LQ241272.1
ncRNA:23   AUUGACUGGUAGAUUGUGAGGGA   1
  ||=||||||*||||||||*||||
targets:50   UAGCUGACCCUCUAACACACCCU   72

2.5 Sequence 7267 from Patent EP2985353 NA coding protein psRNATarget
JB170671.1
ncRNA:23   AUUGACUGGUAGAUUGUGAGGGA   1
  ||=||||||*||||||||*||||
targets:50   UAGCUGACCCUCUAACACACCCU   72

2.5 Sequence 8335 from Patent EP2559767 NA coding protein psRNATarget
JB169603.1
ncRNA:23   AUUGACUGGUAGAUUGUGAGGGA   1
  ||=||||||*||||||||*||||
targets:50   UAGCUGACCCUCUAACACACCCU   72

2.5 Sequence 7267 from Patent EP2559767 NA coding protein psRNATarget
JB170131.1
ncRNA:23   AUU-GACUGGUAGAUUGUGAGGGA   1
  |||-||||||*||||||||*||||
targets:48   UAAGCUGACCCUCUAACACACCCU   71

2.5 Sequence 7795 from Patent EP2559767 NA coding protein psRNATarget
HI409670.1
ncRNA:23   AUU-GACUGGUAGAUUGUGAGGGA   1
  |||-||||||*||||||||*||||
targets:48   UAAGCUGACCCUCUAACACACCCU   71

2.5 Sequence 7795 from Patent EP2074227 NA coding protein psRNATarget
LQ241800.1
ncRNA:23   AUU-GACUGGUAGAUUGUGAGGGA   1
  |||-||||||*||||||||*||||
targets:48   UAAGCUGACCCUCUAACACACCCU   71

2.5 Sequence 7795 from Patent EP2985353 NA coding protein psRNATarget