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BaseInfo

ncRNA ID	novel_zma_miR2227
Species	Zea mays
Class	miRNA
Genome position	Chr4:212924764-212924886 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	100 - CAUAACUAUUGGAGAUGCUCUAAU - 123
Stem-loop(if miRNA)	--                          --  --  UUAAAUCGCAUAUUCAUUCUUGCCUUU   CAUAACUAUUGGAGAUGCUCUAAUGU  UU  UU                           U   ||||||||||||||||||||||||||  ||  ||                           A   GUAUUGAUAACCUCUACGAGAUUGUA  GC  UG                           U AU                          CU  UU  AUUUCGUUGCUCCUGAGAAGUUCACUG
Stem-loop sequence	CAUAACUAUUGGAGAUGCUCUAAUGUUUUUUUAAAUCGCAUAUUCAUUCUUGCCUUUUAUGUCACUUGAAGAGUCCUCGUUGCUUUAGUUUCGUCAUGUUAGAGCAUCUCCAAUAGUUAUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008661727.2	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   *|||||||||*||||||||||||| targets:1614   CUUAGAGCAUGUCCAAUAGUUAUG   1637 Target Full Sequence	1.0	PREDICTED: Zea mays transcription factor GHD7 (LOC103638936), mRNA	NA	coding protein	psRNATarget
XM_008680612.2	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   *||||||||*|||||||||||||| targets:895   UUUAGAGCAACUCCAAUAGUUAUG   918 Target Full Sequence	1.0	PREDICTED: Zea mays YGL010w-like protein (LOC100284635), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649701.2	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   =|*||||||*|||||||||||||| targets:881   GUAAGAGCAACUCCAAUAGUUAUG   904 Target Full Sequence	1.0	PREDICTED: Zea mays putative BCR family protein (LOC100284172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674601.2	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   **||||||||=|||||||*||||| targets:2706   UAUAGAGCAUUUCCAAUAUUUAUG   2729 Target Full Sequence	2.5	PREDICTED: Zea mays transferase, transferring glycosyl groups (LOC100281407), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956609.1	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   **||||||||=|||||||*||||| targets:2145   UAUAGAGCAUUUCCAAUAUUUAUG   2168 Target Full Sequence	2.5	Zea mays clone 1568028 transferase, transferring glycosyl groups mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154325.1	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   **||||||||=|||||||*||||| targets:2145   UAUAGAGCAUUUCCAAUAUUUAUG   2168 Target Full Sequence	2.5	Zea mays transferase, transferring glycosyl groups (LOC100281407), mRNA	NA	coding protein	psRNATarget
BT063131.1	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   *|*||||||*|||||||||||||| targets:1948   CUAAGAGCAACUCCAAUAGUUAUG   1971 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0029C06 mRNA, complete cds	NA	coding protein	psRNATarget
BT040256.1	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   =|*||||||*|||||||||||=|| targets:894   GUAAGAGCAACUCCAAUAGUUGUG   917 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0073L24 mRNA, complete cds	NA	coding protein	psRNATarget
EU942670.1	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   **|||||||||||||||||||*|* targets:223   CCUAGAGCAUCUCCAAUAGUUUUU   246 Target Full Sequence	2.5	Zea mays clone 1529325 mRNA sequence	NA	coding protein	psRNATarget
NM_001143634.1	ncRNA:24   UAA-UCUCGUAGAGGUUAUCAAUAC   1   *||-||||||*|||||||||||||* targets:895   UUUGAGAGCAACUCCAAUAGUUAUA   919 Target Full Sequence	2.0	Zea mays GPI-anchored protein (LOC100217283), mRNA	NA	coding protein	psRNATarget
BT038267.1	ncRNA:24   UAA-UCUCGUAGAGGUUAUCAAUAC   1   *||-||||||*|||||||||||||* targets:895   UUUGAGAGCAACUCCAAUAGUUAUA   919 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0221P05 mRNA, complete cds	NA	coding protein	psRNATarget
AY108604.1	ncRNA:24   UAA-UCUCGUAGAGGUUAUCAAUAC   1   *||-||||||*|||||||||||||* targets:972   UUUGAGAGCAACUCCAAUAGUUAUA   996 Target Full Sequence	2.0	Zea mays PCO079730 mRNA sequence	NA	coding protein	psRNATarget
XM_020537836.1	ncRNA:24   UAAUCUCGUAGAGGUUAUCAAUAC   1   =***|||||||||=|||||||||* targets:1009   GAGUGAGCAUCUCUAAUAGUUAUA   1032 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103625804 (LOC103625804), mRNA	NA	coding protein	psRNATarget