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BaseInfo

ncRNA ID	novel_zma_miR2226
Species	Zea mays
Class	miRNA
Genome position	Chr4:237737506-237737630 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - AAGGGUUGAUUUGGUGACAAAGGG - 24
Stem-loop(if miRNA)	--A                 AAA        A                             GA    AGGGUUGAUUUGGUGAC   GGGAUCCC GGAGGAUUGGAGGGGAUUGAGGGGGAAAU  A    |||||||||||||||||   |||||||| |||||||||||||||||||||||||||||    UCUCGACUAAACCACUG   CCCUAGGG CCUCCUAACCUCCCCUAACUCCCCCUUUA  C GAA                 -GA        C                             AU
Stem-loop sequence	AAGGGUUGAUUUGGUGACAAAGGGAUCCCAGGAGGAUUGGAGGGGAUUGAGGGGGAAAUGAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCCGGGAUCCCAGGUCACCAAAUCAGCUCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973567.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*|||||||||||||||||||* targets:117   CCCCUUGUCACCAAAUCAACCCUG   140 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*|||||||||||||||||||* targets:303   CCCCUUGUCACCAAAUCAACCCUA   326 Target Full Sequence	1.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*|||||||||||||||||||* targets:109   CCCCUUGUCACCAAAUCAACCCUA   132 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*||||||||||||||=||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*||||||||||||||=||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*||||||||||||||=||||* targets:892   CCCCUUGUCACCAAAUCAGCCCUC   915 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*||||||||||||||=||||* targets:853   CCCCUUGUCACCAAAUCAGCCCUC   876 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*||||||||||||||||||** targets:1502   CCCCUUGUCACCAAAUCAACCCAG   1525 Target Full Sequence	2.5	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
HI403300.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |=|*||||||||||||=||||||* targets:63   CUCCUUGUCACCAAAUUAACCCUA   86 Target Full Sequence	2.5	Sequence 1425 from Patent EP2074227	NA	coding protein	psRNATarget
HI403427.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |=|*||||||||||||=||||||* targets:63   CUCCUUGUCACCAAAUUAACCCUA   86 Target Full Sequence	2.5	Sequence 1552 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235430.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |=|*||||||||||||=||||||* targets:63   CUCCUUGUCACCAAAUUAACCCUA   86 Target Full Sequence	2.5	Sequence 1425 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235557.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |=|*||||||||||||=||||||* targets:63   CUCCUUGUCACCAAAUUAACCCUA   86 Target Full Sequence	2.5	Sequence 1552 from Patent EP2985353	NA	coding protein	psRNATarget
JB163761.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |=|*||||||||||||=||||||* targets:63   CUCCUUGUCACCAAAUUAACCCUA   86 Target Full Sequence	2.5	Sequence 1425 from Patent EP2559767	NA	coding protein	psRNATarget
JB163888.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |=|*||||||||||||=||||||* targets:63   CUCCUUGUCACCAAAUUAACCCUA   86 Target Full Sequence	2.5	Sequence 1552 from Patent EP2559767	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   |||*||||||||||||*||||||* targets:406   CCCCUUGUCACCAAAUGAACCCUC   429 Target Full Sequence	2.5	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   ||**||||||||||||||=||||* targets:163   CCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   ||**||||||||||||||=||||* targets:163   CCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   ||**||||||||||||||=||||* targets:163   CCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   ||**||||=||||||||||||||* targets:1599   CCACUUGUUACCAAAUCAACCCUA   1622 Target Full Sequence	2.0	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
EZ058173.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   *|*|||||||*||||||||*|||| targets:472   GCAUUUGUCAGCAAAUCAAACCUU   495 Target Full Sequence	2.5	TSA: Zea mays contig59295, mRNA sequence	NA	coding protein	psRNATarget
EU974244.1	ncRNA:24   GGGAAACAGUGGUUUAGUUGGGAA   1   =|****||||||||||||=||||| targets:491   UCACCGGUCACCAAAUCAGCCCUU   514 Target Full Sequence	2.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget