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BaseInfo

ncRNA ID	novel_zma_miR2224
Species	Zea mays
Class	miRNA
Genome position	Chr4:229275149-229275214 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	21
Mature sequence(if miRNA)	46 - GUUGAGCAUCAAAAGUGGCGG - 66
Stem-loop(if miRNA)	-- G        --     C  --A     --A  A   G UGCUUUUG  GUUCG CA   GCUCC   CC A   | ||||||||  ||||| ||   |||||   ||   C GUGAAAAC  CGAGU GU   CGGGG   GG A GG G        UA     U  AUA     AAC  A
Stem-loop sequence	GGUGCUUUUGGUUCGCCAAGCUCCACCAAAAGGCAAGGGGCAUAUGUUGAGCAUCAAAAGUGGCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001152449.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   |=|||*|*||||||||||||* targets:696   CUGCCUCGUUUGAUGCUCAAG   716 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279442 (LOC100279442), mRNA	NA	coding protein	psRNATarget
BT054246.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   |=|||*|*||||||||||||* targets:696   CUGCCUCGUUUGAUGCUCAAG   716 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0196A07 mRNA, complete cds	NA	coding protein	psRNATarget
EU975269.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   |=|||*|*||||||||||||* targets:785   CUGCCUCGUUUGAUGCUCAAG   805 Target Full Sequence	3.0	Zea mays clone 486086 mRNA sequence	NA	coding protein	psRNATarget
EU974781.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   |=|||*|*||||||||||||* targets:785   CUGCCUCGUUUGAUGCUCAAG   805 Target Full Sequence	3.0	Zea mays clone 458075 mRNA sequence	NA	coding protein	psRNATarget
AY105904.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   ==|*||*|||||||||||||= targets:975   UUGACAAUUUUGAUGCUCAAU   995 Target Full Sequence	3.0	Zea mays PCO126705 mRNA sequence	NA	coding protein	psRNATarget
BT065395.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   ==|*||*|||||||||||||= targets:1022   UUGACAAUUUUGAUGCUCAAU   1042 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0138K01 mRNA, complete cds	NA	coding protein	psRNATarget
EU970949.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   ==|*||*|||||||||||||= targets:1018   UUGACAAUUUUGAUGCUCAAU   1038 Target Full Sequence	3.0	Zea mays clone 354459 prolyl endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136920.1	ncRNA:21   GGCGGUGAAAACUACGAGUUG   1   ==|*||*|||||||||||||= targets:1018   UUGACAAUUUUGAUGCUCAAU   1038 Target Full Sequence	3.0	Zea mays uncharacterized LOC100191488 (pco126705), mRNA	NA	coding protein	psRNATarget