Search result

BaseInfo

ncRNA ID novel_zma_miR2220
Species Zea mays
Class miRNA
Genome position Chr4:232935733-232935798 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - CAACGACUAGUUCUAGGUGGCACU - 24
Stem-loop(if miRNA) --   UG    C     -   --C     -  CA G
  UGU  CCUG GGACU GUC   GGUGC AC  G G
  |||  |||| ||||| |||   ||||| ||  |
  ACG  GGAU CUUGA CAG   CCACG UG  C A
UC   GU    -     U   CAA     A  -A A
Stem-loop sequence UGUUGCCUGCGGACUGUCCGGUGCACCAGGGAACAGUAGCACCAACGACUAGUUCUAGGUGGCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008662326.2
ncRNA:24   UCACGGUGGAUCUUGAUCAGCAAC   1
  ||||||||||=*||||||||||||
targets:1567   AGUGCCACCUGAAACUAGUCGUUG   1590

2.5 PREDICTED: Zea mays NAC domain-containing protein 37 (LOC103639595), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008662324.2
ncRNA:24   UCACGGUGGAUCUUGAUCAGCAAC   1
  ||||||||||=*||||||||||||
targets:1573   AGUGCCACCUGAAACUAGUCGUUG   1596

2.5 PREDICTED: Zea mays NAC domain-containing protein 37 (LOC103639595), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008662328.2
ncRNA:24   UCACGGUGGAUCUUGAUCAGCAAC   1
  ||||||||||=*||||||||||||
targets:1677   AGUGCCACCUGAAACUAGUCGUUG   1700

2.5 PREDICTED: Zea mays NAC domain-containing protein 37 (LOC103639595), transcript variant X3, mRNA NA coding protein psRNATarget