Search result

BaseInfo

ncRNA ID	novel_zma_miR2217
Species	Zea mays
Class	miRNA
Genome position	Chr4:187571385-187571435 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089715
Length	24
Mature sequence(if miRNA)	28 - GGAUUGAGGGGGAUUGAGGGGUUU - 51
Stem-loop(if miRNA)	--   G  UG    UA   -G     A   AUU UU  GUUC  CCC  AAUCC U   ||| ||  ||||  |||  |||||   UGG GA  UAGG  GGG  UUAGG A UU   G  GU    --   AG     U
Stem-loop sequence	AUUGUUUGGUUCUACCCGAAUCCAUAUGGAUUGAGGGGGAUUGAGGGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU972313.1	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   |||||||||=|||||||||||||| targets:23   AAACCCCUCGAUCCCCCUCAAUCC   46 Target Full Sequence	1.0	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   UUUGG-GGAGUUAGGGGGAGUUAGG   1   |||||-||||||||||||||||||| targets:72   AAACCACCUCAAUCCCCCUCAAUCC   96 Target Full Sequence	2.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   UUUGG-GGAGUUAGGGGGAGUUAGG   1   |||||-||||||||||||||||||| targets:72   AAACCACCUCAAUCCCCCUCAAUCC   96 Target Full Sequence	2.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   UUUGG-GGAGUUAGGGGGAGUUAGG   1   |||||-||||||||||||||||||| targets:72   AAACCACCUCAAUCCCCCUCAAUCC   96 Target Full Sequence	2.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UUUGGGGA-GUUAGGGGGAGUUAGG   1   ||||||||-|||||||||||||||| targets:841   AAACCCCUUCAAUCCCCCUCAAUCC   865 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   UUUGGG-GAGUUAGGGGGAGUUAGG   1   ||||||-|||||||||||||||||| targets:598   AAACCCACUCAAUCCCCCUCAAUCC   622 Target Full Sequence	2.0	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUUGGGG-AGUUAGGGGGAGUUAGG   1   |||||||-||||||||||||||||| targets:1961   AAACCCCCUCAAUCCCCCUCAAUCC   1985 Target Full Sequence	2.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   UUUGGGGA--GUUAGGGGGAGUUAGG   1   *||=||||--|||||||||||||||| targets:30   CAAUCCCUUCCAAUCCCCCUCAAUCC   55 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   UUUGGGGAG-UUAGGGGGAGUUAGG   1   ||*||||||-||||||||||||||| targets:3271   AAUCCCCUCCAAUCCCCCUCAAUCC   3295 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   UUUGGGGAG-UUAGGGGGAGUUAGG   1   ||*||||||-||||||||||||||| targets:1592   AAUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   UUUGGGGAG-UUAGGGGGAGUUAGG   1   ||*||||||-||||||||||||||| targets:1592   AAUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   UUU--GGGGAGUUAGGGGGAGUUAGG   1   =||--||||||||||*|||||||||| targets:1599   GAAUCCCCCUCAAUCACCCUCAAUCC   1624 Target Full Sequence	1.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   UUU--GGGGAGUUAGGGGGAGUUAGG   1   =||--||||||||||*|||||||||| targets:1599   GAAUCCCCCUCAAUCACCCUCAAUCC   1624 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   ***|||||=|||||||=||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   ***|||||=|||||||=||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   ***|||||=|||||||=||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   ***|||||=|||||||=||||||| targets:820   UUCCCCCUUAAUCCCCUUCAAUCC   843 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   ***|||||=|||||||=||||||| targets:859   UUCCCCCUUAAUCCCCUUCAAUCC   882 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   ***|||||=|||||||=||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UUUGGGGAGUUAGGGGGAGUUAGG   1   ***|||||=|||||||=||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545649.1	ncRNA:24   UUUG--------GGGAGUUAGGGGGAGUUAGG   1   ||||--------||||||*|||||=||||||| targets:706   AAACUAAUUUCACCCUCAUUCCCCUUCAAUCC   737 Target Full Sequence	2.5	PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA	NA	coding protein	psRNATarget