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BaseInfo

ncRNA ID novel_zma_miR2215
Species Zea mays
Class miRNA
Genome position Chr4:162881579-162881643 [+]
Reference genome RefGen_v4
Source SRR2089712;SRR2287031;SRR2287159
Length 24
Mature sequence(if miRNA) 1 - AUGUAUUGAGGUGGAUUGAGGUGU - 24
Stem-loop(if miRNA) --                  AG   U     AG
  AUGUAUUGAGGUGGAUUG  GUG AAAUU  U
  ||||||||||||||||||  ||| |||||
  UACAUAACUCUAUCUAAU  CAC UUUGA  U
UA                  CU   -     AU
Stem-loop sequence AUGUAUUGAGGUGGAUUGAGGUGUAAAUUAGUUUAAGUUUCACUCUAAUCUAUCUCAAUACAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001156128.2
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||||||||||||||||||||||
targets:883   ACACCUCAAUCCACCUCAAUACAU   906

0.0 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
BT085755.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||||||||||||||||||||||
targets:883   ACACCUCAAUCCACCUCAAUACAU   906

0.0 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
EU941642.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||||||||||||||||||||||
targets:10   ACACCUCAAUCCACCUCAAUACAU   33

0.0 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
JB163690.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||||||||||=||||||||||
targets:62   ACACCUCAAUCCAUCUCAAUACAU   85

1.5 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
HI403229.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||||||||||=||||||||||
targets:62   ACACCUCAAUCCAUCUCAAUACAU   85

1.5 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
LQ235359.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||||||||||=||||||||||
targets:62   ACACCUCAAUCCAUCUCAAUACAU   85

1.5 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
JB163494.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||||||||||||=|||||||||
targets:62   ACACCUCAAUCCACUUCAAUACAU   85

1.5 Sequence 1158 from Patent EP2559767 NA coding protein psRNATarget
HI403033.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||||||||||||=|||||||||
targets:62   ACACCUCAAUCCACUUCAAUACAU   85

1.5 Sequence 1158 from Patent EP2074227 NA coding protein psRNATarget
LQ235163.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||||||||||||=|||||||||
targets:62   ACACCUCAAUCCACUUCAAUACAU   85

1.5 Sequence 1158 from Patent EP2985353 NA coding protein psRNATarget
HI403066.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

1.0 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
JB163527.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

1.0 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

1.0 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
HI403078.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||=||||||||||||||||||=|*
targets:62   ACGCCUCAAUCCACCUCAAUAUAC   85

2.5 Sequence 1203 from Patent EP2074227 NA coding protein psRNATarget
LQ235208.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||=||||||||||||||||||=|*
targets:62   ACGCCUCAAUCCACCUCAAUAUAC   85

2.5 Sequence 1203 from Patent EP2985353 NA coding protein psRNATarget
JB163539.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||=||||||||||||||||||=|*
targets:62   ACGCCUCAAUCCACCUCAAUAUAC   85

2.5 Sequence 1203 from Patent EP2559767 NA coding protein psRNATarget
EU961632.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||||||||=||*||||||||||
targets:1804   ACACCUCAAUUCAGCUCAAUACAU   1827

2.5 Zea mays clone 237175 ferrochelatase-2 mRNA, complete cds NA coding protein psRNATarget
AY110566.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||||=|||||||
targets:295   ACACCCCAAUCCACCUUAAUACAU   318

2.5 Zea mays CL45690_1 mRNA sequence NA coding protein psRNATarget
HI403361.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||||=|||||||
targets:62   ACACCCCAAUCCACCUUAAUACAU   85

2.5 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*=|||||||||||||||||
targets:53   ACACCCUAAUCCACCUCAAUACAU   76

2.0 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
LQ235491.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||||=|||||||
targets:62   ACACCCCAAUCCACCUUAAUACAU   85

2.5 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
JB163782.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||=|||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
JB163781.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||=|||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
JB163822.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||||=|||||||
targets:62   ACACCCCAAUCCACCUUAAUACAU   85

2.5 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||=|||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
HI403320.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||=|||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
HI403321.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||=|||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||=|||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
JB163411.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*=|||||||||||||||||
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.0 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
HI402950.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*=|||||||||||||||||
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.0 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*=|||||||||||||||||
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.0 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
HI402966.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*=|||||||||||||||||
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

2.0 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
LQ235096.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*=|||||||||||||||||
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

2.0 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
JB163427.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*=|||||||||||||||||
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

2.0 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
HI402996.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*|||||||=||||||||||
targets:58   ACACCCCAAUCCAUCUCAAUACAU   81

2.5 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
JB163457.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*|||||||=||||||||||
targets:58   ACACCCCAAUCCAUCUCAAUACAU   81

2.5 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*|||||||=||||||||||
targets:58   ACACCCCAAUCCAUCUCAAUACAU   81

2.5 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
HI403492.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*=|||||||||||||||||
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.0 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
JB163953.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*=|||||||||||||||||
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.0 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*=|||||||||||||||||
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.0 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
JB163478.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |=|||*||||||=|||||||||||
targets:61   AUACCCCAAUCCGCCUCAAUACAU   84

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |=|||*||||||=|||||||||||
targets:61   AUACCCCAAUCCGCCUCAAUACAU   84

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
HI403017.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |=|||*||||||=|||||||||||
targets:61   AUACCCCAAUCCGCCUCAAUACAU   84

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||=||||||||||||*
targets:62   ACACCCCAAUUCACCUCAAUACAA   85

3.0 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
HI403319.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||=||||||||||||*
targets:62   ACACCCCAAUUCACCUCAAUACAA   85

3.0 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
JB163780.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||=||||||||||||*
targets:62   ACACCCCAAUUCACCUCAAUACAA   85

3.0 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
EU963469.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **||||=||||||||||||||||*
targets:973   UAACCUUAAUCCACCUCAAUACAA   996

2.0 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
HI403009.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*=|||=|||||||||||||
targets:88   ACACUCUAAUUCACCUCAAUACAU   111

3.0 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
JB163470.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*=|||=|||||||||||||
targets:88   ACACUCUAAUUCACCUCAAUACAU   111

3.0 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*=|||=|||||||||||||
targets:88   ACACUCUAAUUCACCUCAAUACAU   111

3.0 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
JB163837.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
HI403376.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
HI403198.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||*|||||||||||||||*||||
targets:62   ACAACUCAAUCCACCUCAACACAU   85

1.5 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
LQ235328.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||*|||||||||||||||*||||
targets:62   ACAACUCAAUCCACCUCAACACAU   85

1.5 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
JB163659.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||*|||||||||||||||*||||
targets:62   ACAACUCAAUCCACCUCAACACAU   85

1.5 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
HI403075.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
JB163536.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
LQ239362.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **||||=||||||||||||||||*
targets:23   UAACCUUAAUCCACCUCAAUACAA   46

2.0 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
HI407232.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **||||=||||||||||||||||*
targets:23   UAACCUUAAUCCACCUCAAUACAA   46

2.0 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
JB167693.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **||||=||||||||||||||||*
targets:23   UAACCUUAAUCCACCUCAAUACAA   46

2.0 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||=|*|||||||||||||*||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403263.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||=|*|||||||||||||*||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
HI403262.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||=|*|||||||||||||*||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
JB163723.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||=|*|||||||||||||*||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
JB163724.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||=|*|||||||||||||*||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |||=|*|||||||||||||*||||
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
LQ235585.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||*|=||||||||||||*||||
targets:60   ACACAUUAAUCCACCUCAACACAU   83

2.5 Sequence 1580 from Patent EP2985353 NA coding protein psRNATarget
HI403455.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||*|=||||||||||||*||||
targets:60   ACACAUUAAUCCACCUCAACACAU   83

2.5 Sequence 1580 from Patent EP2074227 NA coding protein psRNATarget
JB163916.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||*|=||||||||||||*||||
targets:60   ACACAUUAAUCCACCUCAACACAU   83

2.5 Sequence 1580 from Patent EP2559767 NA coding protein psRNATarget
BT068947.2
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **||||*||||||=||||||||||
targets:177   UGACCUGAAUCCAUCUCAAUACAU   200

2.5 Zea mays full-length cDNA clone ZM_BFb0013N24 mRNA, complete cds NA coding protein psRNATarget
EU963895.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **|=|*||||||||||||||||||
targets:980   UGAUCCCAAUCCACCUCAAUACAU   1003

1.0 Zea mays clone 273839 protein SFT2 mRNA, complete cds NA coding protein psRNATarget
HI406738.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **|=|*||||||||||||||||||
targets:64   UGAUCCCAAUCCACCUCAAUACAU   87

1.0 Sequence 4863 from Patent EP2074227 NA coding protein psRNATarget
JB167199.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **|=|*||||||||||||||||||
targets:64   UGAUCCCAAUCCACCUCAAUACAU   87

1.0 Sequence 4863 from Patent EP2559767 NA coding protein psRNATarget
LQ238868.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  **|=|*||||||||||||||||||
targets:64   UGAUCCCAAUCCACCUCAAUACAU   87

1.0 Sequence 4863 from Patent EP2985353 NA coding protein psRNATarget
BT085111.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  |*|==*||||||||||||||||||
targets:1191   AAAUUCCAAUCCACCUCAAUACAU   1214

1.0 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
XM_008677341.2
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*|||*|||||||||||||*
targets:2958   ACACUCCAAACCACCUCAAUACAC   2981

3.0 PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA NA coding protein psRNATarget
XM_020550625.1
ncRNA:24   UGUGGAGUUAGGUGGAGUUAUGUA   1
  ||||=*|||*|||||||||||||*
targets:2942   ACACUCCAAACCACCUCAAUACAC   2965

3.0 PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA NA coding protein psRNATarget