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BaseInfo

ncRNA ID novel_zma_miR2209
Species Zea mays
Class miRNA
Genome position Chr3:102365463-102365561 [+]
Reference genome RefGen_v4
Source SRR2089712;SRR2089713
Length 21
Mature sequence(if miRNA) 79 - UGGCAUCCAUUCUUGGCUAAG - 99
Stem-loop(if miRNA) --             CU    U   -     U    UG        A    G
  UAGCCAAGAAUGG  UGCC AUC UCCAU AUUU  UUCAUCGC GGAA C
  |||||||||||||  |||| ||| ||||| ||||  |||||||| ||||
  AUCGGUUCUUACC  ACGG UAG AGGUG UAAA  AGGUAGUG CCUU C
GA             -U    -   U     -    GU        -    C
Stem-loop sequence UAGCCAAGAAUGGCUUGCCUAUCUCCAUUAUUUUGUUCAUCGCAGGAAGCCCUUCCGUGAUGGAUGAAAUGUGGAUGAUGGCAUCCAUUCUUGGCUAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943807.1
ncRNA:21   GAAUCGGUUCUUACCUACGGU   1
  |*||||=|||||||*||||||
targets:577   CGUAGCUAAGAAUGAAUGCCA   597

2.5 Zea mays clone 1688171 mRNA sequence NA coding protein psRNATarget
EZ060943.1
ncRNA:21   GAAUCGGUUCUUACCUACGGU   1
  =**|*||||||||||||||||
targets:89   UGCAUCCAAGAAUGGAUGCCA   109

2.0 TSA: Zea mays contig62065, mRNA sequence NA coding protein psRNATarget