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BaseInfo

ncRNA ID	novel_zma_miR2206
Species	Zea mays
Class	miRNA
Genome position	Chr3:49919634-49919725 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089713;SRR2287031;SRR2287162;SRR2287163;SRR2287164;SRR3341905;SRR5451003;SRR5451006;SRR1997866;SRR2089702;SRR2089705;SRR2089706;SRR2089708
Length	24
Mature sequence(if miRNA)	69 - AGGCAAAGUGUGACAAGUUAGACA - 92
Stem-loop(if miRNA)	--G      AUAC              GAUUAA        -    A    CUAACU    CACACUUUGCCUAA      UUGUUUAA AUUG A    ||||||    ||||||||||||||      |||||||| |||| A    GAUUGA    GUGUGAAACGGAUU      GAUAGAUU UAAU A ACA      -ACA              -AAAAA        C    C
Stem-loop sequence	GCUAACUAUACCACACUUUGCCUAAGAUUAAUUGUUUAAAUUGAAAACUAAUCUUAGAUAGAAAAAUUAGGCAAAGUGUGACAAGUUAGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403368.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||||||||||*||||||||||||| targets:19   UGUCUAACUUAUCACACUUUGCCU   42 Target Full Sequence	1.0	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||||||||||*||||||||||||| targets:19   UGUCUAACUUAUCACACUUUGCCU   42 Target Full Sequence	1.0	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||||||||||||||| targets:19   UGCCUAACUUGUCACACUUUGCCU   42 Target Full Sequence	0.0	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||||||||||||||| targets:19   UGCCUAACUUGUCACACUUUGCCU   42 Target Full Sequence	0.0	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||||||||||||||| targets:19   UGCCUAACUUGUCACACUUUGCCU   42 Target Full Sequence	0.0	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||||||||||*||||||||||||| targets:19   UGUCUAACUUAUCACACUUUGCCU   42 Target Full Sequence	1.0	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   |||||||||||*|||||||||||| targets:1484   UGUCUAACUUGCCACACUUUGCCU   1507 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   |**||||||||||||||||||||| targets:933   UACCUAACUUGUCACACUUUGCCU   956 Target Full Sequence	0.0	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   |**||||||||||||||||||||| targets:933   UACCUAACUUGUCACACUUUGCCU   956 Target Full Sequence	0.0	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:19   UGCCUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:19   UGCCUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:19   UGCCUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
EZ060318.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   |**|||||||||||=||||||||| targets:155   UACCUAACUUGUCAUACUUUGCCU   178 Target Full Sequence	1.5	TSA: Zea mays contig61440, mRNA sequence	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   |**|||||||||||=||||||||| targets:335   UACCUAACUUGUCAUACUUUGCCU   358 Target Full Sequence	1.5	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:931   UGCCUAACUUGCCACACUUUGCCU   954 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:1419   UGCCUAACUUGCCACACUUUGCCU   1442 Target Full Sequence	1.5	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:1429   UGCCUAACUUGCCACACUUUGCCU   1452 Target Full Sequence	1.5	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
BT018862.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:1049   UGCCUAACUUGCCACACUUUGCCU   1072 Target Full Sequence	1.5	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:710   UGGCUAACUUGCCACACUUUGCCU   733 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:710   UGGCUAACUUGCCACACUUUGCCU   733 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:710   UGGCUAACUUGCCACACUUUGCCU   733 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||||||*|||||||||||| targets:2675   UGGCUAACUUGCCACACUUUGCCU   2698 Target Full Sequence	1.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*=|||||||*|||||||||||| targets:19   UGCUUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*=|||||||*|||||||||||| targets:19   UGCUUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*=|||||||*|||||||||||| targets:19   UGCUUAACUUGCCACACUUUGCCU   42 Target Full Sequence	1.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
AY109434.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   ||*||||*|||*|||||||||||| targets:399   UGCCUAAGUUGCCACACUUUGCCU   422 Target Full Sequence	2.5	Zea mays CL2997_-2 mRNA sequence	NA	coding protein	psRNATarget
XM_020542662.1	ncRNA:24   ACAGAUUGA-ACAGUGUGAAACGGA   1   ||*=|||*|-||||||||||||||| targets:1045   UGGUUAAAUGUGUCACACUUUGCCU   1069 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100283356 (LOC100283356), mRNA	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   *|*||*|||||*|||||||||||| targets:980   AGCCUCACUUGCCACACUUUGCCU   1003 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   ACAGAUUGAACAGUGUGAAACGGA   1   *|*|||||||**|||||||||||| targets:2403   AGCCUAACUUACCACACUUUGCCU   2426 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget