Search result

BaseInfo

ncRNA ID	osa-miR171a
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:25891132-25891227 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	67 - UGAUUGAGCCGCGCCAAUAUC - 87
Stem-loop(if miRNA)	---    A  GC          A         C   G           AG    GGAA GA  GAUAUUGGUG GGUUCAAUC GAU AUUGGUUUUAC  C    |||| ||  |||||||||| ||||||||| ||| |||||||||||  A    CCUU CU  CUAUAACCGC CCGAGUUAG CUA UGACUAAAAUG  G UCU    -  --          G         U   -           GU
Stem-loop sequence	GGAAAGAGCGAUAUUGGUGAGGUUCAAUCCGAUGAUUGGUUUUACAGCAGUGGUAAAAUCAGUAUCUGAUUGAGCCGCGCCAAUAUCUCUUCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JX310318.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:441   GAUAUUGGCGCGGCUCAAUCA   461 Target Full Sequence	0.0	Oryza sativa cultivar Dongjin scarecrow-like transcription factor GRAS1 (GRAS1) mRNA, complete cds	NA	coding protein	psRNATarget
AK120317.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:906   GAUAUUGGCGCGGCUCAAUCA   926 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013055O12, full insert sequence	NA	coding protein	psRNATarget
AK066248.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:906   GAUAUUGGCGCGGCUCAAUCA   926 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013055O11, full insert sequence	NA	coding protein	psRNATarget
AK100757.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1324   GAUAUUGGCGCGGCUCAAUCA   1344 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023118P13, full insert sequence	NA	coding protein	psRNATarget
AK072900.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1351   GAUAUUGGCGCGGCUCAAUCA   1371 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023145A02, full insert sequence	NA	coding protein	psRNATarget
XM_015781657.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1476   GAUAUUGGCGCGGCUCAAUCA   1496 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 27 (LOC4336617), mRNA	scarecrow-like protein 27(LOC4336617)	coding protein	psRNATarget
XM_015771930.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1375   GAUAUUGGCGCGGCUCAAUCA   1395 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 6 (LOC4330230), transcript variant X2, mRNA	scarecrow-like protein 6(LOC4330230)	coding protein	psRNATarget
AK101035.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1527   GAUAUUGGCGCGGCUCAAUCA   1547 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023150P14, full insert sequence	NA	coding protein	psRNATarget
XM_015771585.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1524   GAUAUUGGCGCGGCUCAAUCA   1544 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 6 (LOC4330231), mRNA	scarecrow-like protein 6(LOC4330231)	coding protein	psRNATarget
XM_015771929.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   ||||||||||||||||||||| targets:1375   GAUAUUGGCGCGGCUCAAUCA   1395 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 6 (LOC4330230), transcript variant X1, mRNA	scarecrow-like protein 6(LOC4330230)	coding protein	psRNATarget
AK106239.1	ncRNA:21   CUAUAACCGCGCCGAGUUAGU   1   |||||||||||||||||||=| targets:550   GAUAUUGGCGCGGCUCAAUUA   570 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-100-C09, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).