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BaseInfo

ncRNA ID	novel_zma_miR2198
Species	Zea mays
Class	miRNA
Genome position	Chr3:34549157-34549283 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2287164;SRR2287165;SRR5451003;SRR5451005;SRR2089704
Length	24
Mature sequence(if miRNA)	1 - CUGCGCACGCGCGGACUGUUCGGC - 24
Stem-loop(if miRNA)	--       C C    A U     GCCCCAG     -  A  GCCCGGCCGUAAGGCAGGAAACCCU   CUGCGCA G GCGG C GUUCG       AGCGC GG CC                         A   ||||||| | |||| | |||||       ||||| || ||                         G   GACGUGU C CGCC G CAAGC       CCGGU CC UG                         C GA       C C    C C     ------G     C  -  GCCUGCCAGGCGCCGGAUCGCGCUC
Stem-loop sequence	CUGCGCACGCGCGGACUGUUCGGCCCCAGAGCGCGGACCGCCCGGCCGUAAGGCAGGAAACCCUAGCCUCGCGCUAGGCCGCGGACCGUCCGGUCCCUGGCCGCGAACCGCCCGCCCCUGUGCAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943239.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:344   GCCGGACGGUCCGCGCGUGCGCAG   367 Target Full Sequence	1.0	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:285   GCCGGACGGUCCGCGCGUGCGCAG   308 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:866   GCCGGACGGUCCGCGCGUGCGCAG   889 Target Full Sequence	1.0	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:793   GCCGGACGGUCCGCGCGUGCGCAG   816 Target Full Sequence	1.0	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
XM_020547963.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1127   GCCGGACGGUCCGCGCGUGCGCAG   1150 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174685.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1332   GCCGGACGGUCCGCGCGUGCGCAG   1355 Target Full Sequence	1.0	Zea mays uncharacterized LOC100381908 (LOC100381908), mRNA	NA	coding protein	psRNATarget
BT062567.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1332   GCCGGACGGUCCGCGCGUGCGCAG   1355 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0315B06 mRNA, complete cds	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1457   GCCGGACGGUCCGCGCGUGCGCAG   1480 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1457   GCCGGACGGUCCGCGCGUGCGCAG   1480 Target Full Sequence	1.0	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1442   GCCGGACGGUCCGCGCGUGCGCAG   1465 Target Full Sequence	1.0	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT085255.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1552   GCCGGACGGUCCGCGCGUGCGCAG   1575 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196134.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1552   GCCGGACGGUCCGCGCGUGCGCAG   1575 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100501411), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:1524   GCCGGACGGUCCGCGCGUGCGCAG   1547 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||||||| targets:2227   GCCGGACGGUCCGCGCGUGCGCAG   2250 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
JB169162.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||||||||||||||||||* targets:39   GCCGGACAGUCCGCGCGUGCGCAU   62 Target Full Sequence	1.0	Sequence 6826 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240831.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||||||||||||||||||* targets:39   GCCGGACAGUCCGCGCGUGCGCAU   62 Target Full Sequence	1.0	Sequence 6826 from Patent EP2985353	NA	coding protein	psRNATarget
HI408701.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||||||||||||||||||* targets:39   GCCGGACAGUCCGCGCGUGCGCAU   62 Target Full Sequence	1.0	Sequence 6826 from Patent EP2074227	NA	coding protein	psRNATarget
EZ049111.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=|||||||||||=|||| targets:96   GCCGGACGGUCCGCGCGUGUGCAG   119 Target Full Sequence	2.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   |=||=||=|||||||||||||||| targets:1753   GUCGGACGGUCCGCGCGUGCGCAG   1776 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   |=||=||=|||||||||||||||| targets:1753   GUCGGACGGUCCGCGCGUGCGCAG   1776 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CG-GCUUGUCAGGCGCGCACGCGUC   1   ||-||=||=|||||||||||||||| targets:780   GCGCGGACGGUCCGCGCGUGCGCAG   804 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CG-GCUUGUCAGGCGCGCACGCGUC   1   ||-||=||=|||||||||||||||| targets:780   GCGCGGACGGUCCGCGCGUGCGCAG   804 Target Full Sequence	1.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
EU957504.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   *|||=||=|||||||||||=|||| targets:1918   ACCGGACGGUCCGCGCGUGUGCAG   1941 Target Full Sequence	2.5	Zea mays clone 1595644 transferase mRNA, complete cds	NA	coding protein	psRNATarget
LQ237996.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:105   GCCGGACGGUCCGCGCUUGCGCAG   128 Target Full Sequence	2.5	Sequence 3991 from Patent EP2985353	NA	coding protein	psRNATarget
JB166327.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:105   GCCGGACGGUCCGCGCUUGCGCAG   128 Target Full Sequence	2.5	Sequence 3991 from Patent EP2559767	NA	coding protein	psRNATarget
HI405866.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:105   GCCGGACGGUCCGCGCUUGCGCAG   128 Target Full Sequence	2.5	Sequence 3991 from Patent EP2074227	NA	coding protein	psRNATarget
EU970066.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||||*||||| targets:1001   GCCGGACGGUCCGCGCGUACGCAG   1024 Target Full Sequence	2.5	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
XM_008679932.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:1849   GCCGGACGGUCCGCGCAUGCGCAG   1872 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552482.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:1885   GCCGGACGGUCCGCGCAUGCGCAG   1908 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:1941   GCCGGACGGUCCGCGCCUGCGCAG   1964 Target Full Sequence	2.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:1941   GCCGGACGGUCCGCGCCUGCGCAG   1964 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   ||||=||=||||||||*||||||| targets:3679   GCCGGACGGUCCGCGCAUGCGCAG   3702 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001176396.2	ncRNA:24   CG-GCUUGUCAGGCGCGCACGCGUC   1   ||-||=||=|||=|||||||||||| targets:1081   GCGCGGACGGUCUGCGCGUGCGCAG   1105 Target Full Sequence	2.5	Zea mays Amidohydrolase family (LOC100383761), mRNA	NA	coding protein	psRNATarget
BT068223.1	ncRNA:24   CG-GCUUGUCAGGCGCGCACGCGUC   1   ||-||=||=|||=|||||||||||| targets:1081   GCGCGGACGGUCUGCGCGUGCGCAG   1105 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0087M02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156399.1	ncRNA:24   CG-GCUUGUCAGGCGCGCACGCGUC   1   ||-||=||=|||||||||*|||||| targets:1199   GCGCGGACGGUCCGCGCGCGCGCAG   1223 Target Full Sequence	2.5	Zea mays ethylene responsive protein (LOC100283499), mRNA	NA	coding protein	psRNATarget
EU964936.1	ncRNA:24   CG-GCUUGUCAGGCGCGCACGCGUC   1   ||-||=||=|||||||||*|||||| targets:1199   GCGCGGACGGUCCGCGCGCGCGCAG   1223 Target Full Sequence	2.5	Zea mays clone 282666 ethylene responsive protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538776.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   *||*=||=|||||||||||=|||| targets:1728   ACCAGACGGUCCGCGCGUGUGCAG   1751 Target Full Sequence	2.5	PREDICTED: Zea mays transferase (LOC100191750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538775.1	ncRNA:24   CGGCUUGUCAGGCGCGCACGCGUC   1   *||*=||=|||||||||||=|||| targets:1826   ACCAGACGGUCCGCGCGUGUGCAG   1849 Target Full Sequence	2.5	PREDICTED: Zea mays transferase (LOC100191750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ075484.1	ncRNA:24   CG-GCUUGUCAGGCGCGCACGCGUC   1   ||-||=||=*|=||||||||||||| targets:12   GCACGGACGAUUCGCGCGUGCGCAG   36 Target Full Sequence	3.0	TSA: Zea mays contig11121, mRNA sequence	NA	coding protein	psRNATarget