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BaseInfo

ncRNA ID novel_zma_miR2190
Species Zea mays
Class miRNA
Genome position Chr4:243810852-243810928 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 54 - AUCUUCUAGGUUUCUACACAUAGU - 77
Stem-loop(if miRNA) --                A     -     CA      CA
  UAUGUGUAGAAACCUA GAGGA CUACA  UGAAAU  U
  |||||||||||||||| ||||| |||||  ||||||
  AUACACAUCUUUGGAU CUUCU GGUGU  ACUUUG  A
UG                -     A     -A      AU
Stem-loop sequence UAUGUGUAGAAACCUAAGAGGACUACACAUGAAAUCAUAUAGUUUCAAUGUGGAUCUUCUAGGUUUCUACACAUAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235336.1
ncRNA:24   UGAUACACAUCUUUGGAUCUUCUA   1
  |=||||||||||||||||*||||*
targets:11   AUUAUGUGUAGAAACCUAAAAGAA   34

2.5 Sequence 1331 from Patent EP2985353 NA coding protein psRNATarget
JB163667.1
ncRNA:24   UGAUACACAUCUUUGGAUCUUCUA   1
  |=||||||||||||||||*||||*
targets:11   AUUAUGUGUAGAAACCUAAAAGAA   34

2.5 Sequence 1331 from Patent EP2559767 NA coding protein psRNATarget
HI403206.1
ncRNA:24   UGAUACACAUCUUUGGAUCUUCUA   1
  |=||||||||||||||||*||||*
targets:11   AUUAUGUGUAGAAACCUAAAAGAA   34

2.5 Sequence 1331 from Patent EP2074227 NA coding protein psRNATarget
JB163715.1
ncRNA:24   UGAUACACAUCUUUGGAUCUUCUA   1
  |=||||||||||||||||*||||*
targets:11   AUUAUGUGUAGAAACCUAAAAGAA   34

2.5 Sequence 1379 from Patent EP2559767 NA coding protein psRNATarget
HI403254.1
ncRNA:24   UGAUACACAUCUUUGGAUCUUCUA   1
  |=||||||||||||||||*||||*
targets:11   AUUAUGUGUAGAAACCUAAAAGAA   34

2.5 Sequence 1379 from Patent EP2074227 NA coding protein psRNATarget
LQ235384.1
ncRNA:24   UGAUACACAUCUUUGGAUCUUCUA   1
  |=||||||||||||||||*||||*
targets:11   AUUAUGUGUAGAAACCUAAAAGAA   34

2.5 Sequence 1379 from Patent EP2985353 NA coding protein psRNATarget