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BaseInfo

ncRNA ID osa-miR5806
Species Oryza sativa
Class miRNA
Genome position Chr6:24708626-24708706 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 51 - ACAGGCAAAGACAAUGACGGC - 71
Stem-loop(if miRNA) GG    --      -    U GA  A   --GA     -AA U
  GUCC  GAGCUG CAUU G  UU GCC    UCUGG   G U
  ||||  |||||| |||| |  || |||    |||||   |
  UAGG  CUCGGC GUAA C  AA CGG    AGAUU   C A
UG    UU      A    - AG  A   ACAA     GAA G
Stem-loop sequence GGGUCCGAGCUGCAUUUGGAUUAGCCGAUCUGGAAGUUAGCAAGUUAGAAACAGGCAAAGACAAUGACGGCUCUUGGAUGU

Reference

1 PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage";
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ;
Plant Cell. 23:4185-4207(2011).