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BaseInfo

ncRNA ID	novel_zma_miR2189
Species	Zea mays
Class	miRNA
Genome position	Chr3:179786384-179786466 [-]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - AUUCACCGGACUGUUUGGUGGUGC - 24
Stem-loop(if miRNA)	-----       U      C     ---------CU       C   G      GCCAGGC GGUCCG GUGAA           CGCCGCU UCG G      ||||||| |||||| |||||           ||||||| ||| A      UGGUUUG UCAGGC CACUU           GUGGCGG AGU U CGUGG       -      -     AAUAUCAGCAU       C   U
Stem-loop sequence	GCCAGGCUGGUCCGCGUGAACUCGCCGCUCUCGGGAUUUGACGGCGGUGUACGACUAUAAUUCACCGGACUGUUUGGUGGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT066461.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   |||||||||=|||||||||||||| targets:729   GCACCACCAGACAGUCCGGUGAAU   752 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   |*||||||==|||||||||||||| targets:651   GAACCACCGGACAGUCCGGUGAAU   674 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CGUG-GUGGUUUGUCAGGCCACUUA   1   **||-||||=|||||||||||||*| targets:749   AGACUCACCGAACAGUCCGGUGAUU   773 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:15   GCAC-ACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:15   GCAC-ACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:15   GCAC-ACCGGACAGUCCGGUGAAU   37 Target Full Sequence	2.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||*=||||==|||||||||||||| targets:684   GCUUCACCGGACAGUCCGGUGAAU   707 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:604   GCAC-ACCGGACAGUCCGGUGAAU   626 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:740   GCAC-ACCGGACAGUCCGGUGAAU   762 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:740   GCAC-ACCGGACAGUCCGGUGAAU   762 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:700   GCAC-ACCGGACAGUCCGGUGAAU   722 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:701   GCAC-ACCGGACAGUCCGGUGAAU   723 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:701   GCAC-ACCGGACAGUCCGGUGAAU   723 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:565   GCAC-ACCGGACAGUCCGGUGAAU   587 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:565   GCAC-ACCGGACAGUCCGGUGAAU   587 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:413   GCAC-ACCGGACAGUCCGGUGAAU   435 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||| targets:4613   GCAC-ACCGGACAGUCCGGUGAAU   4635 Target Full Sequence	2.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   CGUG-GUGGUUUGUCAGGCCACUUA   1   **||-||||==|||||||||||||| targets:27   UGACUCACCGGACAGUCCGGUGAAU   51 Target Full Sequence	2.0	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||* targets:718   GCAC-ACCGGACAGUCCGGUGAAC   740 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||||-|||==|||||||||||||* targets:718   GCAC-ACCGGACAGUCCGGUGAAC   740 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||-=||=|==|||||||||||||| targets:625   GC-UCAUCGGACAGUCCGGUGAAU   647 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CGUG-GUGGUUUGUCAGGCCACUUA   1   **||-||=|==|||||||||||||| targets:700   UGACUCAUCGGACAGUCCGGUGAAU   724 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   ||-=||=|==|||||||||||||| targets:625   GC-UCAUCGGACAGUCCGGUGAAU   647 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CGUG-GUGGUUUGUCAGGCCACUUA   1   **||-||=|==|||||||||||||| targets:700   UGACUCAUCGGACAGUCCGGUGAAU   724 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   |==|-|||==|||||||||||||| targets:826   GUGC-ACCGGACAGUCCGGUGAAU   848 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CGUGGUGGUUUGUCAGGCCACUUA   1   |==|-|||==|||||||||||||| targets:826   GUGC-ACCGGACAGUCCGGUGAAU   848 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
JB170098.1	ncRNA:20   GUGGUUUGUCAGGCCACUUA   1   ||||==|||||||||||||| targets:1   CACCGGACAGUCCGGUGAAU   20 Target Full Sequence	2.0	Sequence 7762 from Patent EP2559767	NA	coding protein	psRNATarget
HI409637.1	ncRNA:20   GUGGUUUGUCAGGCCACUUA   1   ||||==|||||||||||||| targets:1   CACCGGACAGUCCGGUGAAU   20 Target Full Sequence	2.0	Sequence 7762 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241767.1	ncRNA:20   GUGGUUUGUCAGGCCACUUA   1   ||||==|||||||||||||| targets:1   CACCGGACAGUCCGGUGAAU   20 Target Full Sequence	2.0	Sequence 7762 from Patent EP2985353	NA	coding protein	psRNATarget