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BaseInfo

ncRNA ID novel_zma_miR2184
Species Zea mays
Class miRNA
Genome position Chr3:213764840-213764966 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2089713;SRR2089714;SRR3341905
Length 21
Mature sequence(if miRNA) 107 - UUUUGUUAAUGUUUGGAGUAG - 127
Stem-loop(if miRNA) --                      G          UUUAAAAUC    G    -    GU  CCUGGUG
  UUUUGUUAAUGUUUGGAGUAGC CCGUCAAAGG         UGCA UAGU CCUG  AG       G
  |||||||||||||||||||||| ||||||||||         |||| |||| ||||  ||       C
  AAAACAAUUACAAACCUCAUCG GGUAGUUUCU         GUGU GUCA GGGC  AC       U
UU                      G          ---------    G    A    --  AAAGGUU
Stem-loop sequence UUUUGUUAAUGUUUGGAGUAGCGCCGUCAAAGGUUUAAAAUCUGCAGUAGUCCUGGUAGCCUGGUGGCUUUGGAAACACGGGAACUGGUGUGUCUUUGAUGGGGCUACUCCAAACAUUAACAAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ089975.1
ncRNA:21   GAUGAGGUUUGUAAUUGUUUU   1
  ||*|*||||||||||||||||
targets:25   CUUCACCAAACAUUAACAAAA   45

2.0 TSA: Zea mays contig25621, mRNA sequence NA coding protein psRNATarget
BT084216.1
ncRNA:21   GAUGAGGUUUGUAAUUGUUUU   1
  **|*|||||||||||||||||
targets:1075   AAAAUCCAAACAUUAACAAAA   1095

1.0 Zea mays full-length cDNA clone ZM_BFb0090D11 mRNA, complete cds NA coding protein psRNATarget