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BaseInfo

ncRNA ID novel_zma_miR2182
Species Zea mays
Class miRNA
Genome position Chr3:215343670-215343720 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2287163
Length 24
Mature sequence(if miRNA) 28 - GAAGUGGAUUGAGGGGGAUUGGAG - 51
Stem-loop(if miRNA) --  A             GA    AG
  GA GUGGAUUGAGGGG  UUGG  G
  || |||||||||||||  ||||
  CU CACCUAACUCUCU  AAUU  G
AU  C             -A    AU
Stem-loop sequence GAAGUGGAUUGAGGGGGAUUGGAGGGUAUUAAAUCUCUCAAUCCACCUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT067503.1
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  |||||||||||||||||||||*||
targets:1598   CUCCAAUCCCCCUCAAUCCACCUC   1621

1.5 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  |||||||||||||||||||||*||
targets:1598   CUCCAAUCCCCCUCAAUCCACCUC   1621

1.5 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
XM_020552750.1
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  *||=||||||=||||||||||*||
targets:143   AUCUAAUCCCUCUCAAUCCACCUC   166

2.5 PREDICTED: Zea mays uncharacterized LOC103654238 (LOC103654238), mRNA NA coding protein psRNATarget
EZ082720.1
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  *|==||||||*||||||||||||=
targets:69   GUUUAAUCCCACUCAAUCCACUUU   92

2.0 TSA: Zea mays contig18363, mRNA sequence NA coding protein psRNATarget
HI402991.1
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  *|==||||=||||||||||*||||
targets:78   AUUUAAUCUCCCUCAAUCCCCUUC   101

2.5 Sequence 1116 from Patent EP2074227 NA coding protein psRNATarget
LQ235121.1
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  *|==||||=||||||||||*||||
targets:78   AUUUAAUCUCCCUCAAUCCCCUUC   101

2.5 Sequence 1116 from Patent EP2985353 NA coding protein psRNATarget
JB163452.1
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  *|==||||=||||||||||*||||
targets:78   AUUUAAUCUCCCUCAAUCCCCUUC   101

2.5 Sequence 1116 from Patent EP2559767 NA coding protein psRNATarget
BT066485.2
ncRNA:24   GAGGUUAGGGGGAGUUAGGUGAAG   1
  *|==||||||*||||||||||||=
targets:73   GUUUAAUCCCACUCAAUCCACUUU   96

2.0 Zea mays full-length cDNA clone ZM_BFb0006P05 mRNA, complete cds NA coding protein psRNATarget
NM_001149312.1
ncRNA:24   GAGG--------UUAGGGGGAGUUAGGUGAAG   1
  ||||--------|*||||||||||||||||||
targets:48   CUCCCGCGCCGCAUUCCCCCUCAAUCCACUUC   79

1.0 Zea mays uncharacterized LOC100275152 (LOC100275152), mRNA NA coding protein psRNATarget
EU954524.1
ncRNA:24   GAGG--------UUAGGGGGAGUUAGGUGAAG   1
  ||||--------|*||||||||||||||||||
targets:48   CUCCCGCGCCGCAUUCCCCCUCAAUCCACUUC   79

1.0 Zea mays clone 1469353 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008681548.2
ncRNA:24   GAGG--------UUAGGGGGAGUUAGGUGAAG   1
  ||||--------|*||||||||||||||||||
targets:56   CUCCCGCGCCGCAUUCCCCCUCAAUCCACUUC   87

1.0 PREDICTED: Zea mays hypothetical protein (LOC103654710), mRNA NA coding protein psRNATarget
XM_008681984.2
ncRNA:24   GAGG-UUAGGGGGAGUUAGGUGAAG   1
  ||||-|||*|*=|||||||||||||
targets:1326   CUCCCAAUACAUCUCAAUCCACUUC   1350

3.0 PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA NA coding protein psRNATarget
JB166589.1
ncRNA:24   GAGG---UUAGGGGGAGUUAGGUGAAG   1
  ||||---|||*|*=|||||||||||||
targets:66   CUCCCCUAAUACAUCUCAAUCCACUUC   92

3.0 Sequence 4253 from Patent EP2559767 NA coding protein psRNATarget
HI406128.1
ncRNA:24   GAGG---UUAGGGGGAGUUAGGUGAAG   1
  ||||---|||*|*=|||||||||||||
targets:66   CUCCCCUAAUACAUCUCAAUCCACUUC   92

3.0 Sequence 4253 from Patent EP2074227 NA coding protein psRNATarget
LQ238258.1
ncRNA:24   GAGG---UUAGGGGGAGUUAGGUGAAG   1
  ||||---|||*|*=|||||||||||||
targets:66   CUCCCCUAAUACAUCUCAAUCCACUUC   92

3.0 Sequence 4253 from Patent EP2985353 NA coding protein psRNATarget
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