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BaseInfo

ncRNA ID	osa-miR5517
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:24618621-24618723 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	73 - UGCAUCACGGCGCAUAUGUAG - 93
Stem-loop(if miRNA)	CAAAUCAAUU     CA         -   A AACCC    CA   G               UGCAU  CGGCGCAUA UGU G     CGUU  GUU ACUAC           |||||  ||||||||| ||| |     ||||  ||| ||||A           AUGUA  GCCGUGUGU GCG C     GCAA  CGA UGAUA ACCGACAUGC     AC         U   A -GUAA    AC   A
Stem-loop sequence	CAAAUCAAUUUGCAUCACGGCGCAUAUGUAGAACCCCGUUCAGUUGACUACAAUAGUAAGCCAAACGAAUGCAGCGUUGUGUGCCGCAAUGUACGUACAGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109916.1	ncRNA:21   GAUGUAUACGCGGCACUACGU   1   *|=|=|=|||||||||||||| targets:971   GUGCGUGUGCGCCGUGAUGCA   991 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-150-C07, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).