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BaseInfo

ncRNA ID	novel_zma_miR2173
Species	Zea mays
Class	miRNA
Genome position	Chr3:199141948-199142094 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR5451006
Length	24
Mature sequence(if miRNA)	1 - CGGACAUGUACGGUGCACACCGGA - 24
Stem-loop(if miRNA)	--     A   A     CA        A        CCCCCUUCU         C       -   ----   --      A   CGGAC UGU CGGUG  CACCGGAC GUCCGGUG         AGCCGUUGG UCGGCCA CUU    GUC  CCGCGC G   ||||| ||| |||||  |||||||| ||||||||         ||||||||| ||||||| |||    |||  |||||| A   GCCUG ACA GCCAC  GUGGCCUG CAGGCCAC         UCGGUAGCC AGCCGGU GGG    CAG  GGCGCG U UG     -   G     AC        A        ---------         -       C   UUGC   CC      C
Stem-loop sequence	CGGACAUGUACGGUGCACACCGGACAGUCCGGUGCCCCCUUCUAGCCGUUGGCUCGGCCACUUGUCCCGCGCAGAUCGCGCGGCCGACCGUUGGGCUGGCCGACCGAUGGCUCACCGGACAGUCCGGUGCACACCGGACAGUCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ078101.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:82   UCCGGUGUGCACCGGACAUGUCCG   105 Target Full Sequence	1.5	TSA: Zea mays contig13740, mRNA sequence	NA	coding protein	psRNATarget
LQ241409.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:10   UCCGGUGUGCACCGGACAUGUCCG   33 Target Full Sequence	1.5	Sequence 7404 from Patent EP2985353	NA	coding protein	psRNATarget
HI409279.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:10   UCCGGUGUGCACCGGACAUGUCCG   33 Target Full Sequence	1.5	Sequence 7404 from Patent EP2074227	NA	coding protein	psRNATarget
JB169740.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:10   UCCGGUGUGCACCGGACAUGUCCG   33 Target Full Sequence	1.5	Sequence 7404 from Patent EP2559767	NA	coding protein	psRNATarget
EU964336.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:472   UCCGGUGUGCACCGGACAUGUCCG   495 Target Full Sequence	1.5	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
EU964665.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:1005   UCCGGUGUGCACCGGACAUGUCCG   1028 Target Full Sequence	1.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:985   UCCGGUGUGCACCGGACAUGUCCG   1008 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
BT070124.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:985   UCCGGUGUGCACCGGACAUGUCCG   1008 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
BT054327.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:1350   UCCGGUGUGCACCGGACAUGUCCG   1373 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152486.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||||||||*||||||||| targets:1350   UCCGGUGUGCACCGGACAUGUCCG   1373 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100279484), mRNA	NA	coding protein	psRNATarget
JB169569.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||*|||||*||||||||| targets:9   UCCGGUGUACACCGGACAUGUCCG   32 Target Full Sequence	2.5	Sequence 7233 from Patent EP2559767	NA	coding protein	psRNATarget
HI409108.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||*|||||*||||||||| targets:9   UCCGGUGUACACCGGACAUGUCCG   32 Target Full Sequence	2.5	Sequence 7233 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241238.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   ||||||||*|||||*||||||||| targets:9   UCCGGUGUACACCGGACAUGUCCG   32 Target Full Sequence	2.5	Sequence 7233 from Patent EP2985353	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   AGGCCACACGUGGCAUGUACAGGC   1   |||*||||||||||*||||||||| targets:315   UCCUGUGUGCACCGGACAUGUCCG   338 Target Full Sequence	1.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
LQ241411.1	ncRNA:21   CCACACGUGGCAUGUACAGGC   1   |||||||||||*||||||||| targets:1   GGUGUGCACCGGACAUGUCCG   21 Target Full Sequence	1.5	Sequence 7406 from Patent EP2985353	NA	coding protein	psRNATarget
HI409281.1	ncRNA:21   CCACACGUGGCAUGUACAGGC   1   |||||||||||*||||||||| targets:1   GGUGUGCACCGGACAUGUCCG   21 Target Full Sequence	1.5	Sequence 7406 from Patent EP2074227	NA	coding protein	psRNATarget
JB169742.1	ncRNA:21   CCACACGUGGCAUGUACAGGC   1   |||||||||||*||||||||| targets:1   GGUGUGCACCGGACAUGUCCG   21 Target Full Sequence	1.5	Sequence 7406 from Patent EP2559767	NA	coding protein	psRNATarget