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BaseInfo

ncRNA ID	novel_zma_miR2171
Species	Zea mays
Class	miRNA
Genome position	Chr3:196700051-196700143 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - GGGGCGGACUGUCCGCGGCCUGAG - 24
Stem-loop(if miRNA)	--   -           GC    - G    C   -C     GC    UGG   GGG GCGGACUGUCC  GGCC U AGGC GGA  GGUCC  GGCC   U   ||| |||||||||||  |||| | |||| |||  |||||  ||||   CCC CGCCUGGCAGG  CCGG A UCCG UCU  UCGGG  UCGG   G GU   G           --    C G    -   CU     -A    CGC
Stem-loop sequence	GGGGCGGACUGUCCGCGGCCUGAGGCCGGACGGUCCGCGGCCUGGUGCGCGGCUAGGGCUUCUCUGCCUGACGGCCGGACGGUCCGCGCCCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088349.1	ncRNA:24   GAGUCCGGCGCCUGUCAGGCGGGG   1   |||||||||||||||||||||||| targets:1264   CUCAGGCCGCGGACAGUCCGCCCC   1287 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   GAGUCCGGCGCCUGUCAGGCGGGG   1   |||||||||||||||||||||||| targets:1264   CUCAGGCCGCGGACAGUCCGCCCC   1287 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   GAGUCCGGCGCCUGUCAGGCGGGG   1   |*|||||||||||||||||||||| targets:2707   CCCAGGCCGCGGACAGUCCGCCCC   2730 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EZ049944.1	ncRNA:24   GAGUCCGGCGCCUGUCAGGCGGGG   1   **|=*|||||||=||||||||||* targets:286   GACGCGCCGCGGGCAGUCCGCCCG   309 Target Full Sequence	2.5	TSA: Zea mays contig51062, mRNA sequence	NA	coding protein	psRNATarget