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BaseInfo

ncRNA ID novel_zma_miR2169
Species Zea mays
Class miRNA
Genome position Chr3:193064418-193064473 [+]
Reference genome RefGen_v4
Source SRR2089712;SRR2089701
Length 24
Mature sequence(if miRNA) 33 - GUUUAGAGGACGCUGCUGGAGGGA - 56
Stem-loop(if miRNA) --GA    A       A       UUAG
    UCCA CAGUGUC UCUAAAU    A
    |||| ||||||| |||||||
    AGGU GUCGCAG AGAUUUG    G
AGGG    C       G       CCAA
Stem-loop sequence GAUCCAACAGUGUCAUCUAAAUUUAGAGAACCGUUUAGAGGACGCUGCUGGAGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238002.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *|||||||||||||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

0.0 Sequence 3997 from Patent EP2985353 NA coding protein psRNATarget
HI405872.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *|||||||||||||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

0.0 Sequence 3997 from Patent EP2074227 NA coding protein psRNATarget
JB166333.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *|||||||||||||||||||||||
targets:3   GCCCUCCAGCAGCGUCCUCUAAAC   26

0.0 Sequence 3997 from Patent EP2559767 NA coding protein psRNATarget
EU975903.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *|||||||||||||||||||||||
targets:658   GCCCUCCAGCAGCGUCCUCUAAAC   681

0.0 Zea mays clone 504920 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB166442.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |||||||||||*||||||||||||
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

1.5 Sequence 4106 from Patent EP2559767 NA coding protein psRNATarget
HI405981.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |||||||||||*||||||||||||
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

1.5 Sequence 4106 from Patent EP2074227 NA coding protein psRNATarget
LQ238111.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |||||||||||*||||||||||||
targets:7   UCCCUCCAGCAACGUCCUCUAAAC   30

1.5 Sequence 4106 from Patent EP2985353 NA coding protein psRNATarget
EZ107270.1
ncRNA:24   AGG--GAGGUCGUCGCAGGAGAUUUG   1
  |||--||||||||||||||||||||=
targets:106   UCCGUCUCCAGCAGCGUCCUCUAAAU   131

1.0 TSA: Zea mays contig42928, mRNA sequence NA coding protein psRNATarget
EZ107270.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |*=||||||||||||||*|||||=
targets:13   UGUCUCCAGCAGCGUCCCCUAAAU   36

2.5 TSA: Zea mays contig42928, mRNA sequence NA coding protein psRNATarget
BT088287.1
ncRNA:24   AGG--GAGGUCGUCGCAGGAGAUUUG   1
  |||--||||||||||||||||||||=
targets:583   UCCGUCUCCAGCAGCGUCCUCUAAAU   608

1.0 Zea mays full-length cDNA clone ZM_BFc0119E23 mRNA, complete cds NA coding protein psRNATarget
BT067838.1
ncRNA:24   AGG--GAGGUCGUCGCAGGAGAUUUG   1
  |||--||||||||||||||||||||=
targets:650   UCCGUCUCCAGCAGCGUCCUCUAAAU   675

1.0 Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds NA coding protein psRNATarget
BT067838.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |*=||||||||||||||*|||||=
targets:557   UGUCUCCAGCAGCGUCCCCUAAAU   580

2.5 Zea mays full-length cDNA clone ZM_BFc0167G13 mRNA, complete cds NA coding protein psRNATarget
HI405979.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *||||||||||*||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.5 Sequence 4104 from Patent EP2074227 NA coding protein psRNATarget
LQ238109.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *||||||||||*||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.5 Sequence 4104 from Patent EP2985353 NA coding protein psRNATarget
JB166440.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *||||||||||*||||||||||||
targets:7   CCCCUCCAGCAACGUCCUCUAAAC   30

1.5 Sequence 4104 from Patent EP2559767 NA coding protein psRNATarget
LQ237982.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *||||||||||*||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.5 Sequence 3977 from Patent EP2985353 NA coding protein psRNATarget
HI405852.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *||||||||||*||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.5 Sequence 3977 from Patent EP2074227 NA coding protein psRNATarget
JB166313.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *||||||||||*||||||||||||
targets:8   CCCCUCCAGCAACGUCCUCUAAAC   31

1.5 Sequence 3977 from Patent EP2559767 NA coding protein psRNATarget
EU945316.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *||||||||||*||||||||||||
targets:1313   CCCCUCCAGCAACGUCCUCUAAAC   1336

1.5 Zea mays clone 257973 mRNA sequence NA coding protein psRNATarget
XM_008649073.2
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |*=||||||||||||||||||||=
targets:1783   UGUCUCCAGCAGCGUCCUCUAAAU   1806

1.0 PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649072.2
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |*=||||||||||||||||||||=
targets:1882   UGUCUCCAGCAGCGUCCUCUAAAU   1905

1.0 PREDICTED: Zea mays uncharacterized LOC100191662 (cl18267_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008681125.2
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  ||=||||||||||||||*|||||=
targets:2162   UCUCUCCAGCAGCGUCCCCUAAAU   2185

2.5 PREDICTED: Zea mays cytochrome P450 714C3-like (LOC103654294), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020553398.1
ncRNA:24   AGG-GAGGUCGUCGCAGGAGAUUUG   1
  |||-||||||||||||||||||*|=
targets:1584   UCCUCUCCAGCAGCGUCCUCUAUAU   1608

2.5 PREDICTED: Zea mays transmembrane 9 superfamily protein member 4 (LOC100285157), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553398.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  |*=||||||||||||||||||*|=
targets:1515   UGUCUCCAGCAGCGUCCUCUAUAU   1538

2.5 PREDICTED: Zea mays transmembrane 9 superfamily protein member 4 (LOC100285157), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660174.2
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  *|=|||||||||||*||||||||=
targets:3242   GCUCUCCAGCAGCGCCCUCUAAAU   3265

2.5 PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA NA coding protein psRNATarget
JB166311.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  ****|=|||||||||||||||||=
targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29

2.0 Sequence 3975 from Patent EP2559767 NA coding protein psRNATarget
HI405850.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  ****|=|||||||||||||||||=
targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29

2.0 Sequence 3975 from Patent EP2074227 NA coding protein psRNATarget
LQ237980.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  ****|=|||||||||||||||||=
targets:6   AGGAUUCAGCAGCGUCCUCUAAAU   29

2.0 Sequence 3975 from Patent EP2985353 NA coding protein psRNATarget
EZ099679.1
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  ****||||||||=||||||||||=
targets:100   AGAAUCCAGCAGUGUCCUCUAAAU   123

2.5 TSA: Zea mays contig35334, mRNA sequence NA coding protein psRNATarget
BT085234.2
ncRNA:24   AGGGAGGUCGUCGCAGGAGAUUUG   1
  ****|||||=|||||||||||||=
targets:3   AGAAUCCAGUAGCGUCCUCUAAAU   26

2.0 Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds NA coding protein psRNATarget
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