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BaseInfo

ncRNA ID	novel_zma_miR2168
Species	Zea mays
Class	miRNA
Genome position	Chr3:189005870-189005985 [+]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089704;SRR2089705
Length	21
Mature sequence(if miRNA)	1 - UUUGGGAGGAAGAGUAAUGGA - 21
Stem-loop(if miRNA)	--        G   A U       A       A   -        A   -       CAA   UUUGGGAG AAG G AAUGGAG GGAUUGA GGG GCUAGAAU CCC CACUAUU   U   |||||||| ||| | ||||||| ||||||| ||| |||||||| ||| |||||||   AAACCCUC UUC C UUACUUC CCUAACU CCC CGAUCUUA GGG GUGAUAA   U AC        G   A U       C       -   A        -   A       AUU
Stem-loop sequence	UUUGGGAGGAAGAGUAAUGGAGAGGAUUGAAGGGGCUAGAAUACCCCACUAUUCAAUUUUAAAUAGUGAGGGAUUCUAGCACCCUCAAUCCCCUUCAUUUCACUUGCUCCCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406069.1	ncRNA:21   AGGUAAUGAGAAGGAGGGUUU   1   ||||||||||||||||||||| targets:103   UCCAUUACUCUUCCUCCCAAA   123 Target Full Sequence	0.0	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   AGGUAAUGAGAAGGAGGGUUU   1   ||||||||||||||||||||| targets:103   UCCAUUACUCUUCCUCCCAAA   123 Target Full Sequence	0.0	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   AGGUAAUGAGAAGGAGGGUUU   1   ||||||||||||||||||||| targets:103   UCCAUUACUCUUCCUCCCAAA   123 Target Full Sequence	0.0	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   AGGUAAUGAGAAGGAGGGUUU   1   ||||||||||||||||||||| targets:1056   UCCAUUACUCUUCCUCCCAAA   1076 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   AGGUAAUGAGAAGGAGGGUUU   1   ||||||||||||||||||||| targets:889   UCCAUUACUCUUCCUCCCAAA   909 Target Full Sequence	0.0	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   AGGUAAUGAGAAGGAGGGUUU   1   ||||||||||||||||||||| targets:889   UCCAUUACUCUUCCUCCCAAA   909 Target Full Sequence	0.0	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget