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BaseInfo

ncRNA ID novel_zma_miR2161
Species Zea mays
Class miRNA
Genome position Chr3:127122033-127122124 [+]
Reference genome RefGen_v4
Source SRR2089712
Length 24
Mature sequence(if miRNA) 69 - CAACACAUGUGGAUUGGGGUCAAU - 92
Stem-loop(if miRNA) --          A       A             U   A   C   
  UGACCCUAAU CACAUGU UUGAGGUGGAUUG GGU UAA UUAA
  |||||||||| ||||||| ||||||||||||| ||| ||| |||A
  ACUGGGGUUA GUGUACA AACUCCACCUAAU CCA AUU AAUC
UA          G       C             -   C   U   
Stem-loop sequence UGACCCUAAUACACAUGUAUUGAGGUGGAUUGUGGUAUAACUUAAACUAAUUUACACCUAAUCCACCUCAACACAUGUGGAUUGGGGUCAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543503.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:1816   AUUGACCUCAAUCCACAUGUGUUG   1839

1.0 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543504.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:1815   AUUGACCUCAAUCCACAUGUGUUG   1838

1.0 PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA NA coding protein psRNATarget
JB163724.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
JB163782.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
HI403229.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
JB163723.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
HI403263.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
HI403321.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
LQ235359.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
JB163690.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
JB163837.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
JB163781.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
JB163780.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
HI403262.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
HI403319.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
HI403320.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
HI403376.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:7   AUUGACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
HI403075.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:6   AUUGACCUCAAUCCACAUGUGUUG   29

1.0 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
JB163536.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:6   AUUGACCUCAAUCCACAUGUGUUG   29

1.0 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||||||
targets:6   AUUGACCUCAAUCCACAUGUGUUG   29

1.0 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
JB167406.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||||||=|||||||||=|||||||
targets:4   AUUGACUCCAAUCCACGUGUGUUG   27

2.5 Sequence 5070 from Patent EP2559767 NA coding protein psRNATarget
LQ239075.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||||||=|||||||||=|||||||
targets:4   AUUGACUCCAAUCCACGUGUGUUG   27

2.5 Sequence 5070 from Patent EP2985353 NA coding protein psRNATarget
HI406945.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||||||=|||||||||=|||||||
targets:4   AUUGACUCCAAUCCACGUGUGUUG   27

2.5 Sequence 5070 from Patent EP2074227 NA coding protein psRNATarget
XM_008650840.2
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=|||*||||||||||||
targets:3369   AUUGACCUCAACCCACAUGUGUUG   3392

2.5 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
XM_008659899.2
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=|||||*||||||||||
targets:2067   AUUGACCUCAAUCAACAUGUGUUG   2090

2.5 PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA NA coding protein psRNATarget
HI403361.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||||||
targets:7   AUUAACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
JB163822.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||||||
targets:7   AUUAACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
LQ235491.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||||||
targets:7   AUUAACCUCAAUCCACAUGUGUUG   30

1.0 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
JB163478.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||*|||
targets:6   AUUGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
LQ235147.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||*|||
targets:6   AUUGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
HI403017.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||*|||
targets:6   AUUGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
HI402950.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||*|||
targets:6   AUUGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
JB163411.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||*|||
targets:6   AUUGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||||||=||||||||||||*|||
targets:6   AUUGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
JB163947.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||||||||=|||||||||||*|||
targets:3   AUUGACCCUAAUCCACAUGUAUUG   26

2.5 Sequence 1611 from Patent EP2559767 NA coding protein psRNATarget
HI403486.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||||||||=|||||||||||*|||
targets:3   AUUGACCCUAAUCCACAUGUAUUG   26

2.5 Sequence 1611 from Patent EP2074227 NA coding protein psRNATarget
LQ235616.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||||||||=|||||||||||*|||
targets:3   AUUGACCCUAAUCCACAUGUAUUG   26

2.5 Sequence 1611 from Patent EP2985353 NA coding protein psRNATarget
JB167413.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|=|=||||||||||||||||
targets:6   AUUCAUCUCAAUCCACAUGUGUUG   29

2.0 Sequence 5077 from Patent EP2559767 NA coding protein psRNATarget
HI406952.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|=|=||||||||||||||||
targets:6   AUUCAUCUCAAUCCACAUGUGUUG   29

2.0 Sequence 5077 from Patent EP2074227 NA coding protein psRNATarget
LQ239082.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|=|=||||||||||||||||
targets:6   AUUCAUCUCAAUCCACAUGUGUUG   29

2.0 Sequence 5077 from Patent EP2985353 NA coding protein psRNATarget
HI403009.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||*|||
targets:6   AUUCACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
JB163470.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||*|||
targets:6   AUUCACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||*|||
targets:6   AUUCACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
LQ235186.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||*||||||||=|||||||
targets:7   AUUCACCGCAAUCCACGUGUGUUG   30

2.5 Sequence 1181 from Patent EP2985353 NA coding protein psRNATarget
JB163517.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||*||||||||=|||||||
targets:7   AUUCACCGCAAUCCACGUGUGUUG   30

2.5 Sequence 1181 from Patent EP2559767 NA coding protein psRNATarget
HI403056.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||*||||||||=|||||||
targets:7   AUUCACCGCAAUCCACGUGUGUUG   30

2.5 Sequence 1181 from Patent EP2074227 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||*||||=||||||||||||*|||
targets:6   AUAGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
JB163398.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||*||||=||||||||||||*|||
targets:6   AUAGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
HI403066.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*||||=|||||||||||*|||
targets:6   AUUCACCCUAAUCCACAUGUAUUG   29

2.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*||||=|||||||||||*|||
targets:6   AUUCACCCUAAUCCACAUGUAUUG   29

2.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
JB163527.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*||||=|||||||||||*|||
targets:6   AUUCACCCUAAUCCACAUGUAUUG   29

2.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
HI402937.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||*||||=||||||||||||*|||
targets:6   AUAGACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
HI403051.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||*||=||||||||||||||*|||
targets:6   AUAGAUCCCAAUCCACAUGUAUUG   29

2.5 Sequence 1176 from Patent EP2074227 NA coding protein psRNATarget
LQ235181.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||*||=||||||||||||||*|||
targets:6   AUAGAUCCCAAUCCACAUGUAUUG   29

2.5 Sequence 1176 from Patent EP2985353 NA coding protein psRNATarget
JB163512.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  ||*||=||||||||||||||*|||
targets:6   AUAGAUCCCAAUCCACAUGUAUUG   29

2.5 Sequence 1176 from Patent EP2559767 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||*|||
targets:6   AUUCACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
JB163457.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||*|||
targets:6   AUUCACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
HI402996.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||*|||=||||||||||||*|||
targets:6   AUUCACCUCAAUCCACAUGUAUUG   29

2.5 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
HI407167.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||**|||=|||=|||||||||||
targets:10   AUUCCCCCUAAUUCACAUGUGUUG   33

2.5 Sequence 5292 from Patent EP2074227 NA coding protein psRNATarget
LQ239297.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||**|||=|||=|||||||||||
targets:10   AUUCCCCCUAAUUCACAUGUGUUG   33

2.5 Sequence 5292 from Patent EP2985353 NA coding protein psRNATarget
JB167628.1
ncRNA:24   UAACUGGGGUUAGGUGUACACAAC   1
  |||**|||=|||=|||||||||||
targets:10   AUUCCCCCUAAUUCACAUGUGUUG   33

2.5 Sequence 5292 from Patent EP2559767 NA coding protein psRNATarget
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