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BaseInfo

ncRNA ID osa-miR1870-5p
Species Oryza sativa
Class miRNA
Genome position Chr6:21164755-21164963 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 44 - UGCUGAAUUAGACCUAGUGGGCAU - 67
Stem-loop(if miRNA) -U         -        G      -    ------        C                A     U      U    C          ---AU  UACUGUUGCC
  AGUGUCAAA GUAAUGGA GAUUUG GGAA      AUAAACUG GUUCAUGCUGAAUUAG CCUAG GGGCAU UAUA AUCACAACAC     GG          C
  ||||||||| |||||||| |||||| ||||      |||||||| |||||||||||||||| ||||| |||||| |||| ||||||||||     ||          U
  UCACAGUUU CAUUACCU CUAAAC CCUU      UAUUUGAU CAAGUACGACUUAAUC GGAUU CCCGUA AUAU UAGUGUUGUG     GA          U
AU         U        A      U    ACCUCU        A                G     U      U    C          AUUCC  UCUUUUUCCU
Stem-loop sequence UAGUGUCAAAGUAAUGGAGGAUUUGGGAAAUAAACUGCGUUCAUGCUGAAUUAGACCUAGUGGGCAUUUAUACAUCACAACACAUGGUACUGUUGCCCUUUCCUUUUUCUAGCCUUAGUGUUGUGAUCUAUAUAUGCCCUUUAGGGCUAAUUCAGCAUGAACAUAGUUUAUUCUCCAUUCCUCAAAUCAUCCAUUACUUUUGACACUUA

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).