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BaseInfo

ncRNA ID	novel_zma_miR2154
Species	Zea mays
Class	miRNA
Genome position	Chr2:57292479-57292533 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - AGACACAUGUUUUAGAUAUGACCA - 24
Stem-loop(if miRNA)	--       U   UU     UG  C  UG   AGACACA GUU  AGAUA  AC AU  U   ||||||| |||  |||||  || ||   UCUGUGU CGA  UUUGU  UG UA  A AU       -   -U     GU  -  UU
Stem-loop sequence	AGACACAUGUUUUAGAUAUGACCAUUGUAUUAUGUUGUGUUUUAGCUGUGUCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008645229.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:2140   UGGUCAUGUCUAAAACAUGUGUCU   2163 Target Full Sequence	1.0	PREDICTED: Zea mays meiotic recombination protein SPO11 (LOC100279325), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645232.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:2079   UGGUCAUGUCUAAAACAUGUGUCU   2102 Target Full Sequence	1.0	PREDICTED: Zea mays meiotic recombination protein SPO11 (LOC100279325), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008645234.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:2034   UGGUCAUGUCUAAAACAUGUGUCU   2057 Target Full Sequence	1.0	PREDICTED: Zea mays meiotic recombination protein SPO11 (LOC100279325), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008645235.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:2019   UGGUCAUGUCUAAAACAUGUGUCU   2042 Target Full Sequence	1.0	PREDICTED: Zea mays meiotic recombination protein SPO11 (LOC100279325), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008645236.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:2003   UGGUCAUGUCUAAAACAUGUGUCU   2026 Target Full Sequence	1.0	PREDICTED: Zea mays meiotic recombination protein SPO11 (LOC100279325), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008645237.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:1973   UGGUCAUGUCUAAAACAUGUGUCU   1996 Target Full Sequence	1.0	PREDICTED: Zea mays meiotic recombination protein SPO11 (LOC100279325), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_008668539.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:68   UGGUCAUGUCUAAAACAUGUGUCU   91 Target Full Sequence	1.0	PREDICTED: Zea mays transcription factor bHLH18 (LOC103645498), mRNA	NA	coding protein	psRNATarget
NM_001148979.1	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:812   UGGUCAUGUCUAAAACAUGUGUCU   835 Target Full Sequence	1.0	Zea mays response to low sulfur 3 (LOC100274648), mRNA	NA	coding protein	psRNATarget
EU951972.1	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:812   UGGUCAUGUCUAAAACAUGUGUCU   835 Target Full Sequence	1.0	Zea mays clone 1064091 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY106976.1	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:628   UGGUCAUGUCUAAAACAUGUGUCU   651 Target Full Sequence	1.0	Zea mays PCO125554 mRNA sequence	NA	coding protein	psRNATarget
EU970203.1	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:643   UGGUCAUGUCUAAAACAUGUGUCU   666 Target Full Sequence	1.0	Zea mays clone 342155 gibberellin-regulated protein 2 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658034.2	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:657   UGGUCAUGUCUAAAACAUGUGUCU   680 Target Full Sequence	1.0	PREDICTED: Zea mays gibberellin-regulated protein 1 (LOC100286041), mRNA	NA	coding protein	psRNATarget
EZ049440.1	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||||||=|||||||||||||||| targets:32   UGGUCAUGUCUAAAACAUGUGUCU   55 Target Full Sequence	1.0	TSA: Zea mays contig50558, mRNA sequence	NA	coding protein	psRNATarget
NM_001146927.1	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||*|||=|||||||=|||||||| targets:839   UGGACAUGUCUAAAAUAUGUGUCU   862 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272453 (pco133450), mRNA	NA	coding protein	psRNATarget
BT038742.1	ncRNA:24   ACCAGUAUAGAUUUUGUACACAGA   1   |||*|||=|||||||=|||||||| targets:839   UGGACAUGUCUAAAAUAUGUGUCU   862 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0323A09 mRNA, complete cds	NA	coding protein	psRNATarget