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BaseInfo

ncRNA ID	novel_zma_miR2153
Species	Zea mays
Class	miRNA
Genome position	Chr2:55892387-55892511 [+]
Reference genome	RefGen_v4
Source	SRR2089712
Length	24
Mature sequence(if miRNA)	1 - AAGGGCUGAUUUGGUGAUCCGGGA - 24
Stem-loop(if miRNA)	--A                 -CC                     A                UA    AGGGCUGAUUUGGUGAU   GGGAUCCCGGGAGGAUCGGAG GGAUUGAGGGGGAAAU  G    |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||    UCUCGACUAAACCACUG   CCCUAGGGCUCUCUUAGCCUC CCUAGCUCCCUCUUUA  U GAA                 UUC                     C                UU
Stem-loop sequence	AAGGGCUGAUUUGGUGAUCCGGGAUCCCGGGAGGAUCGGAGAGGAUUGAGGGGGAAAUUAGUUUAUUUCUCCCUCGAUCCCCUCCGAUUCUCUCGGGAUCCCCUUGUCACCAAAUCAGCUCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU950017.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||||=||||||||||||||||* targets:513   UCCCGGGUCACCAAAUCAGCCCUA   536 Target Full Sequence	2.0	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||||=||||||||||||||||* targets:1878   UCCCGGGUCACCAAAUCAGCCCUA   1901 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||||=||||||||||||||||* targets:2316   UCCCGGGUCACCAAAUCAGCCCUA   2339 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	1.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	1.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	1.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||||=|||||||||||*||||| targets:2181   UCCCGGGUCACCAAAUCAACCCUU   2204 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||=|||| targets:160   UCCCCGGUCACCAAAUCAGUCCUU   183 Target Full Sequence	2.5	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
BT087480.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||=|||| targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||=|||| targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT018533.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||=|*|||||=||||||||||||| targets:1919   UCUCUGAUCAUCAAAUCAGCCCUU   1942 Target Full Sequence	1.0	Zea mays clone EL01N0434E06.d mRNA sequence	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	2.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	2.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	2.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|||||||||||||||*||| targets:114   UCCCUGAUCACCAAAUCAGCACUU   137 Target Full Sequence	1.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
HI409984.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|||||||||||||||*||| targets:114   UCCCUGAUCACCAAAUCAGCACUU   137 Target Full Sequence	1.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
JB170445.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|||||||||||||||*||| targets:114   UCCCUGAUCACCAAAUCAGCACUU   137 Target Full Sequence	1.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|=||||||||||||||||* targets:71   UCCCCGGUCACCAAAUCAGCCCUA   94 Target Full Sequence	2.0	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538171.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*||||||||||||||*|||| targets:2   UCCCUGAUCACCAAAUCAGACCUU   25 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068562.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||**||||||||||=||||||| targets:1078   UCCCUAAUCACCAAAUUAGCCCUU   1101 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds	NA	coding protein	psRNATarget
BT085112.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|||||=||||||||||*|| targets:1174   UCCCUGAUCAUCAAAUCAGCCAUU   1197 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292N05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348678.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||*|||||=||||||||||*|| targets:3647   UCCCUGAUCAUCAAAUCAGCCAUU   3670 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384314 (LOC100384314), mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||**|||||||||||||=|||| targets:4511   UCCCUAAUCACCAAAUCAGUCCUU   4534 Target Full Sequence	2.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||**|||||||||||||=|||| targets:4685   UCCCUAAUCACCAAAUCAGUCCUU   4708 Target Full Sequence	2.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552825.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||**|||||||||||||=|||| targets:4776   UCCCUAAUCACCAAAUCAGUCCUU   4799 Target Full Sequence	2.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU943476.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||==|||**||||||||||||||| targets:991   UCUUGGAAAACCAAAUCAGCCCUU   1014 Target Full Sequence	2.0	Zea mays clone 1625592 mRNA sequence	NA	coding protein	psRNATarget
EU941266.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||**||||=||||||||||||* targets:687   UCCCUAAUCAUCAAAUCAGCCCUA   710 Target Full Sequence	3.0	Zea mays clone 1435213 mRNA sequence	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   ||||**||||||||||||||||*| targets:153   UCCCUAAUCACCAAAUCAGCCCGU   176 Target Full Sequence	2.5	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008652765.2	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   *|=|*|*||||=|||||||||||| targets:1760   GCUCUGUUCACUAAAUCAGCCCUU   1783 Target Full Sequence	2.5	PREDICTED: Zea mays xyloglucan galactosyltransferase KATAMARI1 homolog (LOC103631709), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547090.1	ncRNA:24   AGGGCCUAGUGGUUUAGUCGGGAA   1   *|=|*|*||||=|||||||||||| targets:1830   GCUCUGUUCACUAAAUCAGCCCUU   1853 Target Full Sequence	2.5	PREDICTED: Zea mays xyloglucan galactosyltransferase KATAMARI1 homolog (LOC103631709), transcript variant X1, mRNA	NA	coding protein	psRNATarget