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BaseInfo

ncRNA ID	novel_zma_miR2152
Species	Zea mays
Class	miRNA
Genome position	Chr4:18912849-18913001 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - UUCUAGAGACUAAUUUUUAGUCCU - 24
Stem-loop(if miRNA)	---UUCUA A              -C                      GCC      AC        AAAACUACAAC         G GACUAAUUUUUAGU  CUCUAUUUUAUUCUAUUUUAGU   UAAAUU  UAAAUAUA           U         | ||||||||||||||  ||||||||||||||||||||||   ||||||  ||||||||         C CUGGUUAAAAAUUA  GAGAUAAAAUAAGAUAAAAUCA   AUUUAA  AUUUAUAU           A UAAAUAUA -              AA                      AAU      CA        CUUAAUUUUAU
Stem-loop sequence	UUCUAGAGACUAAUUUUUAGUCCUCUAUUUUAUUCUAUUUUAGUGCCUAAAUUACUAAAUAUAAAAACUACAACUAUAUUUUAAUUCUAUAUUUAACAAUUUAUAAACUAAAAUAGAAUAAAAUAGAGAAAUUAAAAAUUGGUCCAUAUAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001153051.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||||||||||| targets:925   GGGACUAAAAAUUAGUCUCUAGAA   948 Target Full Sequence	0.0	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||||||||||| targets:925   GGGACUAAAAAUUAGUCUCUAGAA   948 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   |||||||||||||||||*|||||| targets:1236   AGGACUAAAAAUUAGUCCCUAGAA   1259 Target Full Sequence	1.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   |||||||||||||||||*|||||| targets:1236   AGGACUAAAAAUUAGUCCCUAGAA   1259 Target Full Sequence	1.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
HI410004.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||=|||||||||||||* targets:17   GGGACUAAAGAUUAGUCUCUAGAU   40 Target Full Sequence	2.0	Sequence 8129 from Patent EP2074227	NA	coding protein	psRNATarget
JB170465.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||=|||||||||||||* targets:17   GGGACUAAAGAUUAGUCUCUAGAU   40 Target Full Sequence	2.0	Sequence 8129 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242134.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||=|||||||||||||* targets:17   GGGACUAAAGAUUAGUCUCUAGAU   40 Target Full Sequence	2.0	Sequence 8129 from Patent EP2985353	NA	coding protein	psRNATarget
BT062019.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||*|||||||| targets:2398   GGGACUAAAAAUUAGCCUCUAGAA   2421 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174508.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||*|||||||| targets:2398   GGGACUAAAAAUUAGCCUCUAGAA   2421 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100381696), mRNA	NA	coding protein	psRNATarget
XM_008674864.2	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||*|||||||| targets:2339   GGGACUAAAAAUUAGCCUCUAGAA   2362 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549827.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||*|||||||| targets:1964   GGGACUAAAAAUUAGCCUCUAGAA   1987 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||||*|||||| targets:949   GGGACUAAAAAUUAGUCACUAGAA   972 Target Full Sequence	1.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018349.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||||*|||||| targets:699   GGGACUAAAAAUUAGUCCCUAGAA   722 Target Full Sequence	1.5	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||||*|||||| targets:124   GGGACUAAAAAUUAGUCCCUAGAA   147 Target Full Sequence	1.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||||*|||||| targets:124   GGGACUAAAAAUUAGUCCCUAGAA   147 Target Full Sequence	1.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||||||||||*|||||| targets:124   GGGACUAAAAAUUAGUCCCUAGAA   147 Target Full Sequence	1.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548275.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   *||||||||||||||||*|||||| targets:2152   UGGACUAAAAAUUAGUCCCUAGAA   2175 Target Full Sequence	1.5	PREDICTED: Zea mays putative pentatricopeptide repeat-containing protein At1g09680 (LOC103648586), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657139.2	ncRNA:24   UCC-UGAUUUUUAAUCAGAGAUCUU   1   |||-|||||||||||||||*||||| targets:4219   AGGUACUAAAAAUUAGUCUAUAGAA   4243 Target Full Sequence	1.5	PREDICTED: Zea mays ribosome biogenesis protein BMS1 homolog (LOC103634616), mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||||||||||||||*|| targets:3099   AGAGACUAAAAAUUAGUCUCUAAAA   3123 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||||||||||||||*|| targets:2710   AGAGACUAAAAAUUAGUCUCUAAAA   2734 Target Full Sequence	1.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||||||||||*|||||| targets:2071   AGUGACUAAAAAUUAGUCCCUAGAA   2095 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||||||||||*|||||| targets:2071   AGUGACUAAAAAUUAGUCCCUAGAA   2095 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||||||||||*|||||| targets:901   AGUGACUAAAAAUUAGUCCCUAGAA   925 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   |*|||||||||||||||||||*|| targets:2194   AAGACUAAAAAUUAGUCUCUAAAA   2217 Target Full Sequence	1.5	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
JB163556.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =*|||||||*|||||||||||||| targets:125   GAGACUAAACAUUAGUCUCUAGAA   148 Target Full Sequence	1.0	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =*|||||||*|||||||||||||| targets:125   GAGACUAAACAUUAGUCUCUAGAA   148 Target Full Sequence	1.0	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
HI403095.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =*|||||||*|||||||||||||| targets:125   GAGACUAAACAUUAGUCUCUAGAA   148 Target Full Sequence	1.0	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008674147.2	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:15   GGGACUAAACAUUAGUCCCUAGAA   38 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020546554.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:26   GGGACUAAACAUUAGUCCCUAGAA   49 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943471 (LOC109943471), mRNA	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:1679   GGGACUAAAUAUUAGUCACUAGAA   1702 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT083492.2	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:787   GGGACUAAACAUUAGUCCCUAGAA   810 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:1302   GGGACUAAACAUUAGUCCCUAGAA   1325 Target Full Sequence	2.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:1302   GGGACUAAACAUUAGUCCCUAGAA   1325 Target Full Sequence	2.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
XM_020543841.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:1057   GGGACUAAAUAUUAGUCCCUAGAA   1080 Target Full Sequence	2.5	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*||||||||||*||| targets:953   GGGACUAAACAUUAGUCUCUUGAA   976 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*||||||||||*||| targets:953   GGGACUAAACAUUAGUCUCUUGAA   976 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
JB163456.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAACAUUAGUCCCUAGAA   165 Target Full Sequence	2.5	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAAUAUUAGUCACUAGAA   165 Target Full Sequence	2.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAACAUUAGUCCCUAGAA   165 Target Full Sequence	2.5	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163514.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAAUAUUAGUCACUAGAA   165 Target Full Sequence	2.5	Sequence 1178 from Patent EP2559767	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAAUAUUAGUCACUAGAA   165 Target Full Sequence	2.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235183.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAAUAUUAGUCACUAGAA   165 Target Full Sequence	2.5	Sequence 1178 from Patent EP2985353	NA	coding protein	psRNATarget
HI403053.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAAUAUUAGUCACUAGAA   165 Target Full Sequence	2.5	Sequence 1178 from Patent EP2074227	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAAUAUUAGUCACUAGAA   165 Target Full Sequence	2.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:142   GGGACUAAACAUUAGUCCCUAGAA   165 Target Full Sequence	2.5	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:140   GGGACUAAACAUUAGUCCCUAGAA   163 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:140   GGGACUAAACAUUAGUCCCUAGAA   163 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:140   GGGACUAAACAUUAGUCCCUAGAA   163 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:139   GGGACUAAACAUUAGUCCCUAGAA   162 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:139   GGGACUAAACAUUAGUCCCUAGAA   162 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   UCCUGAUUUUUAAUCAGAGAUCUU   1   =||||||||*|||||||*|||||| targets:139   GGGACUAAACAUUAGUCCCUAGAA   162 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235174.1	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||*|||||||*|||||| targets:139   AGAGACUAAACAUUAGUCCCUAGAA   163 Target Full Sequence	2.5	Sequence 1169 from Patent EP2985353	NA	coding protein	psRNATarget
JB163505.1	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||*|||||||*|||||| targets:139   AGAGACUAAACAUUAGUCCCUAGAA   163 Target Full Sequence	2.5	Sequence 1169 from Patent EP2559767	NA	coding protein	psRNATarget
HI403044.1	ncRNA:24   UC-CUGAUUUUUAAUCAGAGAUCUU   1   ||-|||||||*|||||||*|||||| targets:139   AGAGACUAAACAUUAGUCCCUAGAA   163 Target Full Sequence	2.5	Sequence 1169 from Patent EP2074227	NA	coding protein	psRNATarget
EU964411.1	ncRNA:24   UCCUGAU-UUUUAAUCAGAGAUCUU   1   *|*|=||-|=||||||||||||||| targets:1   UGAAUUACAGAAUUAGUCUCUAGAA   25 Target Full Sequence	3.0	Zea mays clone 278702 transcription initiation factor IID, 18kD subunit family protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:24   UCCU----GAUUUUUAAUCAGAGAUCUU   1   =|||----||*||||||||||||*|||| targets:1188   GGGAGCAACUUAAAAUUAGUCUCAAGAA   1215 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544078.1	ncRNA:24   UCCU----GAUUUUUAAUCAGAGAUCUU   1   =|||----||*||||||||||||*|||| targets:1114   GGGAGCAACUUAAAAUUAGUCUCAAGAA   1141 Target Full Sequence	2.5	PREDICTED: Zea mays protein CELLULOSE SYNTHASE INTERACTIVE 1-like (LOC103637845), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544079.1	ncRNA:24   UCCU----GAUUUUUAAUCAGAGAUCUU   1   =|||----||*||||||||||||*|||| targets:1092   GGGAGCAACUUAAAAUUAGUCUCAAGAA   1119 Target Full Sequence	2.5	PREDICTED: Zea mays protein CELLULOSE SYNTHASE INTERACTIVE 1-like (LOC103637845), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539456.1	ncRNA:24   UCCU----GAUUUUUAAUCAGAGAUCUU   1   =|||----||*||||||||||||*|||| targets:813   GGGAGCAACUUAAAAUUAGUCUCAAGAA   840 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539457.1	ncRNA:24   UCCU----GAUUUUUAAUCAGAGAUCUU   1   =|||----||*||||||||||||*|||| targets:791   GGGAGCAACUUAAAAUUAGUCUCAAGAA   818 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539458.1	ncRNA:24   UCCU----GAUUUUUAAUCAGAGAUCUU   1   =|||----||*||||||||||||*|||| targets:656   GGGAGCAACUUAAAAUUAGUCUCAAGAA   683 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539459.1	ncRNA:24   UCCU----GAUUUUUAAUCAGAGAUCUU   1   =|||----||*||||||||||||*|||| targets:473   GGGAGCAACUUAAAAUUAGUCUCAAGAA   500 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X5, mRNA	NA	coding protein	psRNATarget