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BaseInfo

ncRNA ID novel_zma_miR2151
Species Zea mays
Class miRNA
Genome position Chr2:10174744-10174844 [-]
Reference genome RefGen_v4
Source SRR2089712;SRR2287031;SRR2287159;SRR2287162;SRR2287163;SRR4237225;SRR5451006;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089703;SRR2089704;SRR2089705;SRR2089707
Length 21
Mature sequence(if miRNA) 1 - GCUUUAAGAUUGAUGGGGUGG - 21
Stem-loop(if miRNA) --                               A   UAAAGCAAUAGAAC
  ACCCCAUCAAUCUUAAAGUAAUAGAACACCG UCU              A
  ||||||||||||||||||||||||||||||| |||
  UGGGGUAGUUAGAAUUUCGUUGUCUUGUGGC UCG              G
GG                               -   GUGAAGAGACGUCC
Stem-loop sequence ACCCCAUCAAUCUUAAAGUAAUAGAACACCGAUCUUAAAGCAAUAGAACAGCCUGCAGAGAAGUGGCUCGGUGUUCUGUUGCUUUAAGAUUGAUGGGGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547872.1
ncRNA:21   GGUGGGGUAGUUAGAAUUUCG   1
  ||||||||||||||||||||=
targets:3428   CCACCCCAUCAAUCUUAAAGU   3448

1.0 PREDICTED: Zea mays accumulation of photosystem one1 (LOC100383040), transcript variant X4, mRNA NA coding protein psRNATarget
EU970586.1
ncRNA:21   GGUGGGGUAGUUAGAAUUUCG   1
  *=|=**|||||||||||||||
targets:1777   AUAUAACAUCAAUCUUAAAGC   1797

3.0 Zea mays clone 347628 cytochrome P450 CYP76M15 mRNA, complete cds NA coding protein psRNATarget
XM_008663570.2
ncRNA:21   GGUGGGGUAGUUAGAAUUUCG   1
  *=|=**|||||||||||||||
targets:1972   AUAUAACAUCAAUCUUAAAGC   1992

3.0 PREDICTED: Zea mays cytochrome P450 76M5-like (LOC103640554), mRNA NA coding protein psRNATarget