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BaseInfo

ncRNA ID	novel_zma_miR2148
Species	Zea mays
Class	miRNA
Genome position	Chr2:26086562-26086695 [-]
Reference genome	RefGen_v4
Source	SRR2089712;SRR2089715
Length	24
Mature sequence(if miRNA)	111 - AAGGGCUUGUUUGGUUUGUGGCUA - 134
Stem-loop(if miRNA)	--A     U            G   AACUG    C           -------------        CG   G    AGGGC UGUUUGGUUUGU GCU     UGCC CACUUUGCCUA             AGGUUAGU  UUC A    ||||| |||||||||||| |||     |||| |||||||||||             ||||||||  ||| A    UCCCG ACAAACCAAGCA UGG     ACGG GUGAAACGGAU             UCCAAUCA  AAG U CAA     U            A   GGUUA    U           UGAAAAGACGGAU        AU   U
Stem-loop sequence	AAGGGCUUGUUUGGUUUGUGGCUAACUGUGCCCCACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUAGGCAGAAAAGUUAGGCAAAGUGUGGCAAUUGGGGUAACGAACCAAACAUGCCCUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545710.1	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   |||||||||||||||||||||||| targets:2663   UAGCCACAAACCAAACAAGCCCUU   2686 Target Full Sequence	0.0	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   |||||||||||||||||=|||||* targets:996   UAGCCACAAACCAAACAGGCCCUA   1019 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   |||||||||||||||||=|||||* targets:1586   UAGCCACAAACCAAACAGGCCCUA   1609 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   ||*||||||||||||||=|||||| targets:216   UAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   ||*||||||||||||||=|||||| targets:216   UAACCACAAACCAAACAGGCCCUU   239 Target Full Sequence	1.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158867.1	ncRNA:24   AUCGGUG-UUUGGUUUGUUCGGGAA   1   |||=|||-=|||||||||||||||| targets:897   UAGUCACCGAACCAAACAAGCCCUU   921 Target Full Sequence	3.0	Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA	NA	coding protein	psRNATarget
NM_001158867.1	ncRNA:24   AUCGGUG-UUUGGUUUGUUCGGGAA   1   |||=|||-=|||||||||||||||| targets:857   UAGUCACCGAACCAAACAAGCCCUU   881 Target Full Sequence	3.0	Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA	NA	coding protein	psRNATarget
EU974994.1	ncRNA:24   AUCGGUG-UUUGGUUUGUUCGGGAA   1   |||=|||-=|||||||||||||||| targets:897   UAGUCACCGAACCAAACAAGCCCUU   921 Target Full Sequence	3.0	Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
EU974994.1	ncRNA:24   AUCGGUG-UUUGGUUUGUUCGGGAA   1   |||=|||-=|||||||||||||||| targets:857   UAGUCACCGAACCAAACAAGCCCUU   881 Target Full Sequence	3.0	Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT088093.1	ncRNA:24   AUCGGUG-UUUGGUUUGUUCGGGAA   1   |||=|||-=|||||||||||||||| targets:878   UAGUCACCGAACCAAACAAGCCCUU   902 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds	NA	coding protein	psRNATarget
BT088093.1	ncRNA:24   AUCGGUG-UUUGGUUUGUUCGGGAA   1   |||=|||-=|||||||||||||||| targets:838   UAGUCACCGAACCAAACAAGCCCUU   862 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   |||||||||||||||||*|||||* targets:888   UAGCCACAAACCAAACAUGCCCUA   911 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008671564.2	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   |||*|||=||||||||||*||||| targets:1282   UAGACACGAACCAAACAACCCCUU   1305 Target Full Sequence	2.5	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase (LOC103646970), mRNA	NA	coding protein	psRNATarget
XM_020549322.1	ncRNA:24   AUCGGUGUUUGGUUUGUUCGGGAA   1   |||*|||=||||||||||*||||| targets:1282   UAGACACGAACCAAACAACCCCUU   1305 Target Full Sequence	2.5	PREDICTED: Zea mays 1-aminocyclopropane-1-carboxylate oxidase-like (LOC109939280), mRNA	NA	coding protein	psRNATarget
BT037664.1	ncRNA:24   AUCGGU-GUUUGGUUUGUUCGGGAA   1   |||*||-|||||||||||||||||* targets:1334   UAGACAUCAAACCAAACAAGCCCUA   1358 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154039.2	ncRNA:24   AUCGGU-GUUUGGUUUGUUCGGGAA   1   |||*||-|||||||||||||||||* targets:2081   UAGACAUCAAACCAAACAAGCCCUA   2105 Target Full Sequence	3.0	Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA	NA	coding protein	psRNATarget
EU955653.1	ncRNA:24   AUCGGU-GUUUGGUUUGUUCGGGAA   1   |||*||-|||||||||||||||||* targets:2082   UAGACAUCAAACCAAACAAGCCCUA   2106 Target Full Sequence	3.0	Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds	NA	coding protein	psRNATarget