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BaseInfo

ncRNA ID	novel_zma_miR2147
Species	Zea mays
Class	miRNA
Genome position	Chr4:209727346-209727400 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	32 - AAGCUACUGCGGACUGCCAAACGC - 55
Stem-loop(if miRNA)	--    C   --   -   C     C  A   GUUU GGC  UUC UAG AGCUU UG C   |||| |||  ||| ||| ||||| || C   CAAA CCG  AGG GUC UCGAA AC A CG    -   UC   C   A     A  C
Stem-loop sequence	GUUUCGGCUUCUAGCAGCUUCUGACCACCAAAAGCUACUGCGGACUGCCAAACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973347.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   |=|||||||||||||||||||||| targets:39   GUGUUUGGCAGUCCGCAGUAGCUU   62 Target Full Sequence	0.0	Zea mays clone 397172 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
EZ111561.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   ||||||||||||||||||*||||| targets:147   GCGUUUGGCAGUCCGCAGCAGCUU   170 Target Full Sequence	1.5	TSA: Zea mays contig47222, mRNA sequence	NA	coding protein	psRNATarget
EZ054166.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   ||||||||||||||||||*||||| targets:268   GCGUUUGGCAGUCCGCAGCAGCUU   291 Target Full Sequence	1.5	TSA: Zea mays contig55288, mRNA sequence	NA	coding protein	psRNATarget
EU947367.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   ||||||||||||||||||*||||| targets:244   GCGUUUGGCAGUCCGCAGCAGCUU   267 Target Full Sequence	1.5	Zea mays clone 341166 mRNA sequence	NA	coding protein	psRNATarget
XM_008657517.2	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   ||||||||||||||||||*||||| targets:2538   GCGUUUGGCAGUCCGCAGCAGCUU   2561 Target Full Sequence	1.5	PREDICTED: Zea mays Protein translocase subunit SECA2 chloroplastic (LOC103634940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055791.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   ||||||||=||*|||||||||||| targets:1248   GCGUUUGGUAGCCCGCAGUAGCUU   1271 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0192E20 mRNA, complete cds	NA	coding protein	psRNATarget
BT061642.2	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   *=||||||||||||||||*||||| targets:1850   AUGUUUGGCAGUCCGCAGCAGCUU   1873 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0168K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT019104.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   |||||||*||||||||||*||||| targets:757   GCGUUUGACAGUCCGCAGCAGCUU   780 Target Full Sequence	2.5	Zea mays clone Contig706.F mRNA sequence	NA	coding protein	psRNATarget
BT018867.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   |||||||*||||||||||*||||| targets:1582   GCGUUUGACAGUCCGCAGCAGCUU   1605 Target Full Sequence	2.5	Zea mays clone EL01N0561F02.d mRNA sequence	NA	coding protein	psRNATarget
EU951194.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   *=|||||*||||||||||*||||| targets:297   AUGUUUGACAGUCCGCAGCAGCUU   320 Target Full Sequence	2.5	Zea mays clone 689005 mRNA sequence	NA	coding protein	psRNATarget
BT042815.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   *=|||||*||||||||||*||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0045N18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148703.1	ncRNA:24   CGCAAACCGUCAGGCGUCAUCGAA   1   *=|||||*||||||||||*||||| targets:1626   AUGUUUGACAGUCCGCAGCAGCUU   1649 Target Full Sequence	2.5	Zea mays General transcription factor IIH subunit 2 (LOC100274342), mRNA	NA	coding protein	psRNATarget